RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CLPSL1A2RUU4 121 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 MEGF11A6BM72 1044 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 RFPL4AA6NLU0 287 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 RFPL4AL1F8VTS6 287 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 G3V4G9 280 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 TSPAN15O95858 294 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 PRB2P02812 416 aaPredicted RBP9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 MAS1P04201 325 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 DUX4L2P0CJ85 424 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 DUX4L3P0CJ86 424 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 DUX4L4P0CJ87 422 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 DUX4L5P0CJ88 424 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 DUX4L6P0CJ89 424 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 DUX4L7P0CJ90 424 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 TMEM225BP0DP42 221 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 ZNF93P35789 620 aaPredicted RBP9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 NPBWR2P48146 333 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 GP2P55259 537 aaKnown RBP9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 RAG2P55895 527 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 FABP5Q01469 135 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 NEDD8Q15843 81 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 HSD17B12Q53GQ0 312 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 KPRPQ5T749 579 aaPredicted RBP9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 SYT6Q5T7P8 510 aaPredicted RBP9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 CD276Q5ZPR3 534 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 DUX4L9Q6RFH8 374 aaPredicted RBP9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 ZNF788Q6ZQV5 615 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 CDH26Q8IXH8 852 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 FAM216BQ8N7L0 139 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 PNLDC1Q8NA58 520 aaKnown RBP9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 PXT1Q8NFP0 134 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 FAM110DQ8TAY7 271 aaPredicted RBP9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 TNFAIP8L1Q8WVP5 186 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 EMG1Q92979 244 aaKnown RBP9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 UPRTQ96BW1 309 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 GAFA1Q96PS6 74 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 FAM192AQ9GZU8 254 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 MS4A7Q9GZW8 240 aaPredicted RBP9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 PPIL3Q9H2H8 161 aaKnown RBP9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 RHOFQ9HBH0 211 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 TCF7L1Q9HCS4 588 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 RBFOX1Q9NWB1 397 aaKnown RBP9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 DUX4Q9UBX2 424 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 FAM181BA6NEQ2 426 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 DVL1O14640 695 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 SIGLEC5O15389 551 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 NDUFB3O43676 98 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 FCN3O75636 299 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 ARL6IP5O75915 188 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 TFF1P04155 84 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 CRYBA1P05813 215 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 LIPFP07098 398 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 SRMP19623 302 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 GALP22466 123 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 PTGFRP43088 359 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 GABRA2P47869 451 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 OR3A4PP47883 348 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 C11orf91Q3C1V1 193 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 CD200R1LQ6Q8B3 271 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 FIP1L1Q6UN15 594 aaKnown RBP9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 C9orf139Q6ZV77 190 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 LRRTM1Q86UE6 522 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 FAM58AQ8N1B3 248 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 MRAPQ8TCY5 172 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 MUL1Q969V5 352 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 SDSLQ96GA7 329 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 MED30Q96HR3 178 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 NR1H4Q96RI1 486 aaPredicted RBP9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 NKX3-1Q99801 234 aaPredicted RBP9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 NUDT16L1Q9BRJ7 211 aaKnown RBP9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 VCX3AQ9NNX9 186 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 HMG20AQ9NP66 347 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 OR14J1Q9UGF5 321 aa9.8□□□□□ -0.84
SQSTM1-206ENST00000466342 TENM3Q9P273 2699 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 TRDV1A0A1B0GX56 115 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 TRIM64CA6NLI5 447 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 ENSAO43768 121 aaKnown RBP9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 NDUFA7O95182 113 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 SFTPBP07988 381 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 SELLP14151 372 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 PRKACAP17612 351 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 PRDX2P32119 198 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 MTNR1BP49286 362 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 CEBPDP49716 269 aaPredicted RBP9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 BMXP51813 675 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 LOXL3P58215 753 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 BPIFB3P59826 476 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 IKZF1Q13422 519 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 ZNF146Q15072 292 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 FAM189A2Q15884 450 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 DGUOKQ16854 277 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 LRRC10Q5BKY1 277 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 SPIN3Q5JUX0 258 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 ELP2Q6IA86 826 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 ASCL4Q6XD76 172 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 LYPD6Q86Y78 171 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 ZNF561Q8N587 486 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 JAGN1Q8N5M9 183 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 CD177Q8N6Q3 437 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 ST8SIA4Q92187 359 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms