RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 NAA60Q9H7X0 242 aa10.15□□□□□ -0.79
NPHP4-204ENST00000460696 OR5AC2Q9NZP5 309 aa10.15□□□□□ -0.79
NPHP4-204ENST00000460696 GNG12Q9UBI6 72 aa10.15□□□□□ -0.79
NPHP4-204ENST00000460696 COL4A3Q01955 1670 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 TRGV5A0A0B4J1U4 118 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 PIGBOS1A0A0B4J2F0 54 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 A0A0U1RQV5 110 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 PMS2P1A4D2B8 440 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 CEBPZOSA8MTT3 80 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 RFPL3SP0C7P2 107 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 CD37P11049 281 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 CD59P13987 128 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 ZNF674Q2M3X9 581 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 OR8G2PQ6IF36 304 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 ADAM5Q6NVV9 412 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 TMEM65Q6PI78 240 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 LYZL2Q7Z4W2 148 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 SKA3Q8IX90 412 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 MRPL13Q9BYD1 178 aaKnown RBP10.14□□□□□ -0.79
NPHP4-204ENST00000460696 SLC7A10Q9NS82 523 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 RASL12Q9NYN1 266 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 LTBP2Q14767 1821 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 TRAV39A0A0B4J263 110 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 CD74P04233 296 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 CBR1P16152 277 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 F2RL1P55085 397 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 OR8G1Q15617 311 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 HAGHQ16775 308 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 ZNF528Q3MIS6 628 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 OR10S1Q8NGN2 331 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 PHYHIPLQ96FC7 376 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 AKR1E2Q96JD6 320 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 RTL8AQ9BWD3 113 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 NMES1Q9C002 83 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 C5orf66Q9H5L9 145 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 DOPEY2Q9Y3R5 2298 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 FER1L5A0AVI2 2057 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 RPS10-NUDT3A0A1W2PQS6 291 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 CST4P01036 141 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 CTSDP07339 412 aaPredicted RBP10.14□□□□□ -0.79
NPHP4-204ENST00000460696 CHATP28329 748 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 RPS10P46783 165 aaKnown RBP10.14□□□□□ -0.79
NPHP4-204ENST00000460696 PJVKQ0ZLH3 352 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 VAX1Q5SQQ9 334 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 OR8U1Q8NH10 309 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 SLC25A28Q96A46 364 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 SDSLQ96GA7 329 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 PLPPR2Q96GM1 343 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 HES7Q9BYE0 225 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 BIN3Q9NQY0 253 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 ZNF391Q9UJN7 358 aa10.14□□□□□ -0.79
NPHP4-204ENST00000460696 KIAA2026Q5HYC2 2103 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 PCDH15Q96QU1 1955 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 CTXN2P0C2S0 81 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 IAPPP10997 89 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 RPUSD3Q6P087 351 aaKnown RBP10.13□□□□□ -0.79
NPHP4-204ENST00000460696 PLEKHF2Q9H8W4 249 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 ENY2Q9NPA8 101 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 SLC2A9Q9NRM0 540 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 ERRFI1Q9UJM3 462 aaPredicted RBP10.13□□□□□ -0.79
NPHP4-204ENST00000460696 NPTNQ9Y639 398 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 FAM24AA6NFZ4 105 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 IFNA17P01571 189 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 AADACP22760 399 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 CALCRP30988 508 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 TMEM50BP56557 158 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 UBE2KP61086 200 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 SPANXN5Q5MJ07 72 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 RGS7BPQ6MZT1 257 aaPredicted RBP10.13□□□□□ -0.79
NPHP4-204ENST00000460696 MRPL14Q6P1L8 145 aaKnown RBP10.13□□□□□ -0.79
NPHP4-204ENST00000460696 RBMXL1Q96E39 390 aaKnown RBP10.13□□□□□ -0.79
NPHP4-204ENST00000460696 PIK3IP1Q96FE7 263 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 OR10C1Q96KK4 312 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 USF3Q68DE3 2245 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 DHRS7CA6NNS2 312 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 RNASEK-C17orf49H0YIS7 233 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 SHOXO15266 292 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 GLAP06280 429 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 H2AFB1P0C5Y9 115 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 FAM87AP0C7U9 286 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 GNG3P63215 75 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 ANKRD55Q3KP44 614 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 SLC30A7Q8NEW0 376 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 OR1J1Q8NGS3 322 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 ADAT1Q9BUB4 502 aaKnown RBP10.13□□□□□ -0.79
NPHP4-204ENST00000460696 SHARPINQ9H0F6 387 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 URGCP-MRPS24S4R325 110 aa10.13□□□□□ -0.79
NPHP4-204ENST00000460696 NAV3Q8IVL0 2385 aa10.12□□□□□ -0.79
NPHP4-204ENST00000460696 ALPK3Q96L96 1907 aa10.12□□□□□ -0.79
NPHP4-204ENST00000460696 ZFP92A6NM28 416 aa10.12□□□□□ -0.79
NPHP4-204ENST00000460696 CDX4O14627 284 aaPredicted RBP10.12□□□□□ -0.79
NPHP4-204ENST00000460696 LYZL6O75951 148 aa10.12□□□□□ -0.79
NPHP4-204ENST00000460696 PRF1P14222 555 aa10.12□□□□□ -0.79
NPHP4-204ENST00000460696 RCC1P18754 421 aaPredicted RBP10.12□□□□□ -0.79
NPHP4-204ENST00000460696 EDDM3BP56851 147 aa10.12□□□□□ -0.79
NPHP4-204ENST00000460696 POLR2GP62487 172 aaKnown RBP eCLIP10.12□□□□□ -0.79
NPHP4-204ENST00000460696 MIDNQ504T8 468 aa10.12□□□□□ -0.79
NPHP4-204ENST00000460696 RNF144BQ7Z419 303 aa10.12□□□□□ -0.79
NPHP4-204ENST00000460696 PAQR4Q8N4S7 273 aaPredicted RBP10.12□□□□□ -0.79
NPHP4-204ENST00000460696 OR11L1Q8NGX0 322 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms