RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 DEDDO75618 318 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 NGFP01138 241 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 HKR1P10072 659 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 CD82P27701 267 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 PDCD1Q15116 288 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 C3AR1Q16581 482 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 TFAP2EQ6VUC0 442 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 OR1K1Q8NGR3 316 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 EXTL1Q92935 676 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 SLAMF9Q96A28 289 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 MRPL24Q96A35 216 aaKnown RBP12.94□□□□□ -0.34
LDLR-202ENST00000455727 HIST1H2AAQ96QV6 131 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 LDAHQ9H6V9 325 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 CRIM1Q9NZV1 1036 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 PCDHB10Q9UN67 800 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 TRGV5A0A0B4J1U4 118 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 CD300LBA8K4G0 201 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 ZNF732B4DXR9 585 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 IL18BPO95998 194 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 NAPSAO96009 420 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 OR5AC1P0C628 307 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 FXYD4P59646 89 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 SMCO1Q147U7 214 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 TRIP6Q15654 476 aaKnown RBP12.94□□□□□ -0.34
LDLR-202ENST00000455727 ZNF766Q5HY98 468 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 FBXW9Q5XUX1 488 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 LIAT1Q6ZQX7 453 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 CCDC71LQ8N9Z2 235 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 TMEM178AQ8NBL3 297 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 BCL2L2Q92843 193 aaPredicted RBP12.94□□□□□ -0.34
LDLR-202ENST00000455727 DEFB127Q9H1M4 99 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 PLK3Q9H4B4 646 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 ZDHHC11Q9H8X9 412 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 MTCH1Q9NZJ7 389 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 PRSS50Q9UI38 385 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 MPC1Q9Y5U8 109 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 TRAPPC2LH3BP13 241 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 H7C1Q1 480 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 FAM157CP0CG43 387 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 APLNRP35414 380 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 SPEM2Q0P670 501 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 CLN3Q13286 438 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 EIF5AL1Q6IS14 154 aaKnown RBP12.93□□□□□ -0.34
LDLR-202ENST00000455727 LINC00596Q86U02 117 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 OR5L1Q8NGL2 311 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 OR1S2Q8NGQ3 325 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 NANOS1Q8WY41 292 aaKnown RBP12.93□□□□□ -0.34
LDLR-202ENST00000455727 OR5P3Q8WZ94 311 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 C18orf12Q96KH6 178 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 ZFP57Q9NU63 452 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 ZNF175Q9Y473 711 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 PPYP01298 95 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 HERV-K104P61576 105 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 ARG2P78540 354 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 TGIF1Q15583 401 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 FAM185AQ8N0U4 392 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 GLYATL2Q8WU03 294 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 TMED6Q8WW62 240 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 GTF3AQ92664 365 aaKnown RBP12.93□□□□□ -0.34
LDLR-202ENST00000455727 MSI2Q96DH6 328 aaKnown RBP12.93□□□□□ -0.34
LDLR-202ENST00000455727 PRRX2Q99811 253 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 ZNF552Q9H707 407 aaPredicted RBP12.93□□□□□ -0.34
LDLR-202ENST00000455727 PLEKHA2Q9HB19 425 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 Q9N2K0 584 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 SPRR3Q9UBC9 169 aa12.93□□□□□ -0.34
LDLR-202ENST00000455727 ARGFXA6NJG6 315 aa12.92□□□□□ -0.34
LDLR-202ENST00000455727 SLC22A20A6NK97 555 aa12.92□□□□□ -0.34
LDLR-202ENST00000455727 OR5B21A6NL26 309 aa12.92□□□□□ -0.34
LDLR-202ENST00000455727 ANKRD30BLA7E2S9 258 aa12.92□□□□□ -0.34
LDLR-202ENST00000455727 K7EPK0 472 aa12.92□□□□□ -0.34
LDLR-202ENST00000455727 ZNF205O95201 554 aa12.92□□□□□ -0.34
LDLR-202ENST00000455727 AADACP22760 399 aa12.92□□□□□ -0.34
LDLR-202ENST00000455727 RPL12P30050 165 aaKnown RBP12.92□□□□□ -0.34
LDLR-202ENST00000455727 SP6Q3SY56 376 aa12.92□□□□□ -0.34
LDLR-202ENST00000455727 LGI3Q8N145 548 aa12.92□□□□□ -0.34
LDLR-202ENST00000455727 FAM71E2Q8N5Q1 922 aa12.92□□□□□ -0.34
LDLR-202ENST00000455727 BPIFCQ8NFQ6 507 aa12.92□□□□□ -0.34
LDLR-202ENST00000455727 SAT2Q96F10 170 aaPredicted RBP12.92□□□□□ -0.34
LDLR-202ENST00000455727 ZNF629Q9UEG4 869 aaPredicted RBP12.92□□□□□ -0.34
LDLR-202ENST00000455727 J3QW42 95 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 GAPDHP04406 335 aaKnown RBP12.91□□□□□ -0.34
LDLR-202ENST00000455727 WNT5AP41221 380 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 RNFT1Q5M7Z0 435 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 ATP1A1-AS1Q5TC04 95 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 ZNF573Q86YE8 665 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 SPACA1Q9HBV2 294 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 ASF1BQ9NVP2 202 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 LRP3O75074 770 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 BTN1A1Q13410 526 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 HIKESHIQ53FT3 197 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 PHLDA2Q53GA4 152 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 PIP4P1Q86T03 277 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 FOXRED2Q8IWF2 684 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 LHFPL5Q8TAF8 219 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 ARL11Q969Q4 196 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 RIMS4Q9H426 269 aaPredicted RBP12.91□□□□□ -0.34
LDLR-202ENST00000455727 C12orf49Q9H741 205 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 LPAR3Q9UBY5 353 aa12.91□□□□□ -0.34
LDLR-202ENST00000455727 DOCK7Q96N67 2140 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 E5RGE8 158 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms