RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 FOXRED1Q96CU9 486 aaPredicted RBP10.27□□□□□ -0.77
USP40-205ENST00000430158 CENPOQ9BU64 300 aa10.27□□□□□ -0.77
USP40-205ENST00000430158 TMPRSS13Q9BYE2 586 aa10.27□□□□□ -0.77
USP40-205ENST00000430158 FAM234AQ9H0X4 552 aa10.27□□□□□ -0.77
USP40-205ENST00000430158 METTL9Q9H1A3 318 aa10.27□□□□□ -0.77
USP40-205ENST00000430158 IFT22Q9H7X7 185 aa10.27□□□□□ -0.77
USP40-205ENST00000430158 YAE1D1Q9NRH1 226 aa10.27□□□□□ -0.77
USP40-205ENST00000430158 OR14J1Q9UGF5 321 aa10.27□□□□□ -0.77
USP40-205ENST00000430158 INSIG2Q9Y5U4 225 aa10.27□□□□□ -0.77
USP40-205ENST00000430158 LOC105371242A0A075B767 164 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 TRAV24A0A0B4J272 114 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 IGHV2-70DA0A0C4DH43 119 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 NKX6-3A6NJ46 265 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 A8MV72 311 aaPredicted RBP10.26□□□□□ -0.77
USP40-205ENST00000430158 LDLRAD4O15165 306 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 HTR3BO95264 441 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 OR2H2O95918 312 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 TK1P04183 234 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 VSIG8P0DPA2 414 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 BMXP51813 675 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 OR10A3P58181 314 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 IL13RA2Q14627 380 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 RSU1Q15404 277 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 PIGYQ3MUY2 71 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 SLC22A6Q4U2R8 563 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 GDPGP1Q6ZNW5 385 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 SLC16A12Q6ZSM3 486 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 BTN2A1Q7KYR7 527 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 GLCCI1Q86VQ1 547 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 PNLDC1Q8NA58 520 aaKnown RBP10.26□□□□□ -0.77
USP40-205ENST00000430158 SNX22Q96L94 193 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 CHCHD6Q9BRQ6 235 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 DCTN5Q9BTE1 182 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 FAM192AQ9GZU8 254 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 SLITRK2Q9H156 845 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 ELL3Q9HB65 397 aaPredicted RBP10.26□□□□□ -0.77
USP40-205ENST00000430158 VCX3AQ9NNX9 186 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 SLC25A10Q9UBX3 287 aaPredicted RBP10.26□□□□□ -0.77
USP40-205ENST00000430158 FBLN5Q9UBX5 448 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 RPUSD1Q9UJJ7 312 aaKnown RBP10.26□□□□□ -0.77
USP40-205ENST00000430158 SSR3Q9UNL2 185 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 GSTK1Q9Y2Q3 226 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 V9GY05 133 aa10.26□□□□□ -0.77
USP40-205ENST00000430158 TMEM14DPA8MWL7 114 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 SLC33A1O00400 549 aaPredicted RBP10.25□□□□□ -0.77
USP40-205ENST00000430158 SH2D1BO14796 132 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 NDUFB3O43676 98 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 ZNF780AO75290 641 aaPredicted RBP10.25□□□□□ -0.77
USP40-205ENST00000430158 ECDO95905 644 aaPredicted RBP10.25□□□□□ -0.77
USP40-205ENST00000430158 FSHBP01225 129 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 GATA3P23771 443 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 HTR2CP28335 458 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 TGFBR1P36897 503 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 OR3A1P47881 315 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 SNU13P55769 128 aaKnown RBP10.25□□□□□ -0.77
USP40-205ENST00000430158 RBM11P57052 281 aaKnown RBP10.25□□□□□ -0.77
USP40-205ENST00000430158 UNC119Q13432 240 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 PDCD1Q15116 288 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 CR1LQ2VPA4 569 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 LRRC10Q5BKY1 277 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 SIGIRRQ6IA17 410 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 TPRA1Q86W33 373 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 OSR2Q8N2R0 312 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 OR4S1Q8NGB4 309 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 OR6M1Q8NGM8 313 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 ST8SIA4Q92187 359 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 CYYR1Q96J86 154 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 Q96M66 194 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 DMRTB1Q96MA1 342 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 FUNDC2Q9BWH2 189 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 KCNK15Q9H427 330 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 EXOSC4Q9NPD3 245 aaKnown RBP10.25□□□□□ -0.77
USP40-205ENST00000430158 GHRLQ9UBU3 117 aa10.25□□□□□ -0.77
USP40-205ENST00000430158 IFITM5A6NNB3 132 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 INAFM1C9JVW0 142 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 J3QLI3 93 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 BPNT1O95861 308 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 CLEC2LP0C7M8 214 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 UBBP0CG47 229 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 MMP9P14780 707 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 RAB3BP20337 219 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 SERPINA2P20848 420 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 SDC2P34741 201 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 PSMD7P51665 324 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 GPR176Q14439 515 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 CD276Q5ZPR3 534 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 AWAT2Q6E213 333 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 OR10K2Q6IF99 312 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 TCF23Q7RTU1 214 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 OR8H2Q8N162 312 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 C11orf42Q8N5U0 333 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 CHST4Q8NCG5 386 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 TMEM185AQ8NFB2 350 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 MRPS24Q96EL2 167 aaKnown RBP10.24□□□□□ -0.77
USP40-205ENST00000430158 KCTD7Q96MP8 289 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 NUDT16L1Q9BRJ7 211 aaKnown RBP10.24□□□□□ -0.77
USP40-205ENST00000430158 NAA50Q9GZZ1 169 aaKnown RBP10.24□□□□□ -0.77
USP40-205ENST00000430158 BANF2Q9H503 90 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 C19orf12Q9NSK7 152 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 RCC2Q9P258 522 aaKnown RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms