RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ZGRF1Q86YA3 2104 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 TIMM8AO60220 97 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-203ENST00000353578 CST6Q15828 149 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 PAQR6Q6TCH4 344 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 PNKDQ8N490 385 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 SIRT6Q8N6T7 355 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 FBLIM1Q8WUP2 373 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 ZNF407Q9C0G0 2248 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 ADAM20O43506 726 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 MRPL30Q8TCC3 161 aaKnown RBP11.28□□□□□ -0.6
COL6A3-203ENST00000353578 CBLN4Q9NTU7 201 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 ZNF217O75362 1048 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 AAED1Q7RTV5 226 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 SHANK1Q9Y566 2161 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 CHST1O43916 411 aa11.28□□□□□ -0.6
COL6A3-203ENST00000353578 ZNF660Q6AZW8 331 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-203ENST00000353578 ADAMTSL3P82987 1691 aa11.27□□□□□ -0.6
COL6A3-203ENST00000353578 EIF3IQ13347 325 aaKnown RBP11.27□□□□□ -0.6
COL6A3-203ENST00000353578 PYCR3Q53H96 274 aa11.27□□□□□ -0.6
COL6A3-203ENST00000353578 VAX1Q5SQQ9 334 aa11.27□□□□□ -0.6
COL6A3-203ENST00000353578 RPEQ96AT9 228 aa11.27□□□□□ -0.6
COL6A3-203ENST00000353578 DERL1Q9BUN8 251 aa11.27□□□□□ -0.6
COL6A3-203ENST00000353578 NHSQ6T4R5 1651 aa11.27□□□□□ -0.6
COL6A3-203ENST00000353578 A0A1W2PPC4 97 aa11.27□□□□□ -0.6
COL6A3-203ENST00000353578 LSM11P83369 360 aaKnown RBP eCLIP11.27□□□□□ -0.6
COL6A3-203ENST00000353578 MS4A7Q9GZW8 240 aaPredicted RBP11.27□□□□□ -0.6
COL6A3-203ENST00000353578 ISG20L2Q9H9L3 353 aaKnown RBP11.27□□□□□ -0.6
COL6A3-203ENST00000353578 CLN8Q9UBY8 286 aa11.27□□□□□ -0.6
COL6A3-203ENST00000353578 APOBEC3BQ9UH17 382 aaKnown RBP11.27□□□□□ -0.6
COL6A3-203ENST00000353578 PTPRFP10586 1907 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 MYOFQ9NZM1 2061 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 SLC2A10O95528 541 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 CD8AP01732 235 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 RELBQ01201 579 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 TNFRSF9Q07011 255 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 GLIS2Q9BZE0 524 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-203ENST00000353578 ULBP3Q9BZM4 244 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 CACNG5Q9UF02 275 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 VSTM2AQ8TAG5 236 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 ORAOV1Q8WV07 137 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 Q96M85 177 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 CDCP1Q9H5V8 836 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 MYOZ1Q9NP98 299 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-203ENST00000353578 WNT3P56703 355 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 MEX3DQ86XN8 651 aaKnown RBP11.27□□□□□ -0.61
COL6A3-203ENST00000353578 LINC00597Q9H2U6 94 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 SOCS7O14512 581 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 CA11O75493 328 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 DHRS3O75911 302 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 FGF18O76093 207 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 CLDN17P56750 224 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 TMEM176BQ3YBM2 270 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-203ENST00000353578 IMMP2LQ96T52 175 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 SLC7A10Q9NS82 523 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 SPTAN1Q13813 2472 aaKnown RBP11.27□□□□□ -0.61
COL6A3-203ENST00000353578 IGKV6D-21A0A0A0MT36 114 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 RAB29O14966 203 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 LANCL1O43813 399 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 TRGC2P03986 189 aa11.27□□□□□ -0.61
COL6A3-203ENST00000353578 S100A4P26447 101 aaKnown RBP11.27□□□□□ -0.61
COL6A3-203ENST00000353578 ZFPL1O95159 310 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 YPEL5P62699 121 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 PPP1R17O96001 155 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 OR10S1Q8NGN2 331 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 TMEM45BQ96B21 275 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 OGG1O15527 345 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 ENSAO43768 121 aaKnown RBP11.26□□□□□ -0.61
COL6A3-203ENST00000353578 IER3P46695 156 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 ETFBKMTQ8IXQ9 262 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 OR2V1Q8NHB1 315 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 TUBD1Q9UJT1 453 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 COL22A1Q8NFW1 1626 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-203ENST00000353578 TARM1B6A8C7 271 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 HINT1P49773 126 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-203ENST00000353578 MICBQ29980 383 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 OR10X1Q8NGY0 326 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 MRGPRX4Q96LA9 322 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 IGLV3-10A0A075B6K4 115 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 PLA2G10O15496 165 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 IAPPP10997 89 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 HIST1H4GQ99525 98 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 DUSP23Q9BVJ7 150 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 C1QTNF6Q9BXI9 259 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 HDGFL3Q9Y3E1 203 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 GFYI3L273 518 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 TMPRSS3P57727 454 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 NHLRC1Q6VVB1 395 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 SPPL3Q8TCT6 385 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 DYNLT3P51808 116 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 RPS20P60866 119 aaKnown RBP11.26□□□□□ -0.61
COL6A3-203ENST00000353578 HERPUD1Q15011 391 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 PAPPA-AS1Q5QFB9 102 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 ZFAND6Q6FIF0 208 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 BCDIN3DQ7Z5W3 292 aaKnown RBP11.26□□□□□ -0.61
COL6A3-203ENST00000353578 OR10AD1Q8NGE0 317 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 SDF2Q99470 211 aa11.26□□□□□ -0.61
COL6A3-203ENST00000353578 SLC25A5P05141 298 aaKnown RBP11.26□□□□□ -0.61
COL6A3-203ENST00000353578 CIRBPQ14011 172 aaKnown RBP11.26□□□□□ -0.61
COL6A3-203ENST00000353578 SDCBPO00560 298 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-203ENST00000353578 DOCK1Q14185 1865 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms