RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 MS4A8Q9BY19 250 aa15.8■□□□□ 0.12
SMAD4-201ENST00000342988 RIMBP3CA6NJZ7 1639 aa15.8■□□□□ 0.12
SMAD4-201ENST00000342988 RIMBP3BA6NNM3 1639 aa15.8■□□□□ 0.12
SMAD4-201ENST00000342988 RIMBP3Q9UFD9 1639 aa15.8■□□□□ 0.12
SMAD4-201ENST00000342988 SRSF10O75494 262 aaKnown RBP15.8■□□□□ 0.12
SMAD4-201ENST00000342988 SLC35B1P78383 322 aa15.8■□□□□ 0.12
SMAD4-201ENST00000342988 SPATA45Q537H7 98 aa15.8■□□□□ 0.12
SMAD4-201ENST00000342988 CYSLTR2Q9NS75 346 aa15.8■□□□□ 0.12
SMAD4-201ENST00000342988 UQCR10Q9UDW1 63 aa15.8■□□□□ 0.12
SMAD4-201ENST00000342988 THADAQ6YHU6 1953 aa15.8■□□□□ 0.12
SMAD4-201ENST00000342988 ZNF735P0CB33 412 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 GSG1Q2KHT4 349 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 LEMD1Q68G75 181 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 TREX1Q9NSU2 369 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 TMEM211Q6ICI0 200 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 BADQ92934 168 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 KIR3DX1Q9H7L2 352 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 Q6ZNX1 250 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 PRRX2Q99811 253 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 TM4SF20Q53R12 229 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 S1PR2O95136 353 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 CKS2P33552 79 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 PCBP3P57721 371 aaKnown RBP15.79■□□□□ 0.12
SMAD4-201ENST00000342988 C3orf85A0A1B0GTC6 90 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 RTP5Q14D33 572 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 C20orf196Q8IYI0 205 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 ATF1P18846 271 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 LIM2P55344 173 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 HTRA3P83110 453 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 HS3ST3A1Q9Y663 406 aa15.79■□□□□ 0.12
SMAD4-201ENST00000342988 ARSAP15289 507 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 RACK1P63244 317 aaKnown RBP15.78■□□□□ 0.12
SMAD4-201ENST00000342988 TEX30Q5JUR7 227 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 GLDNQ6ZMI3 551 aaPredicted RBP15.78■□□□□ 0.12
SMAD4-201ENST00000342988 STPG3Q8N7X2 389 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 SMIM4Q8WVI0 70 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 CTRCQ99895 268 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 DEFB127Q9H1M4 99 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 TOGARAM1Q9Y4F4 1720 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 CEBPBP17676 345 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 ZNF683Q8IZ20 524 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 C12orf76Q8N812 135 aaPredicted RBP15.78■□□□□ 0.12
SMAD4-201ENST00000342988 ISL2Q96A47 359 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 C4AP0C0L4 1744 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 C4BP0C0L5 1744 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 TOPAZ1Q8N9V7 1692 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.78■□□□□ 0.12
SMAD4-201ENST00000342988 RBMY1BA6NDE4 496 aaKnown RBP15.78■□□□□ 0.12
SMAD4-201ENST00000342988 RBMY1EA6NEQ0 496 aaKnown RBP15.78■□□□□ 0.12
SMAD4-201ENST00000342988 RBMY1DP0C7P1 496 aaKnown RBP15.78■□□□□ 0.12
SMAD4-201ENST00000342988 RBMY1A1P0DJD3 496 aaKnown RBP15.78■□□□□ 0.12
SMAD4-201ENST00000342988 RBMY1CP0DJD4 496 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 PI3P19957 117 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 CSNK1EP49674 416 aaKnown RBP15.78■□□□□ 0.12
SMAD4-201ENST00000342988 DYNLT3P51808 116 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 RTN4RL1Q86UN2 441 aaPredicted RBP15.78■□□□□ 0.12
SMAD4-201ENST00000342988 ARL6IP6Q8N6S5 226 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 OR4C3Q8NH37 302 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 GALNT14Q96FL9 552 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 FOXC2Q99958 501 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 TMUB1Q9BVT8 246 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 MOGAT3Q86VF5 341 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 FBXO27Q8NI29 283 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 METTL26Q96S19 204 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 MRM1Q6IN84 353 aaKnown RBP15.78■□□□□ 0.12
SMAD4-201ENST00000342988 ARHGAP32A7KAX9 2087 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 DOCK4Q8N1I0 1966 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 TARM1B6A8C7 271 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 PTOV1Q86YD1 416 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 WDFY1Q8IWB7 410 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 FAM221AA4D161 298 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 C1QTNF9BB2RNN3 333 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 HOXA3O43365 443 aaPredicted RBP15.78■□□□□ 0.12
SMAD4-201ENST00000342988 OR1F12Q8NHA8 337 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 RAB1CQ92928 201 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 ASCL3Q9NQ33 180 aa15.78■□□□□ 0.12
SMAD4-201ENST00000342988 ARAP2Q8WZ64 1704 aa15.77■□□□□ 0.12
SMAD4-201ENST00000342988 SMIM13P0DJ93 91 aa15.77■□□□□ 0.12
SMAD4-201ENST00000342988 CCR5P51681 352 aa15.77■□□□□ 0.12
SMAD4-201ENST00000342988 MEF2CQ06413 473 aaPredicted RBP15.77■□□□□ 0.12
SMAD4-201ENST00000342988 SAXO2Q658L1 398 aa15.77■□□□□ 0.12
SMAD4-201ENST00000342988 MAP1LC3AQ9H492 121 aa15.77■□□□□ 0.12
SMAD4-201ENST00000342988 A0A1W2PS18 150 aa15.77■□□□□ 0.12
SMAD4-201ENST00000342988 HBZP02008 142 aa15.77■□□□□ 0.12
SMAD4-201ENST00000342988 CD22P20273 847 aa15.77■□□□□ 0.12
SMAD4-201ENST00000342988 CD68P34810 354 aaPredicted RBP15.77■□□□□ 0.12
SMAD4-201ENST00000342988 FAM71F2Q6NXP2 309 aa15.77■□□□□ 0.12
SMAD4-201ENST00000342988 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.77■□□□□ 0.114e-10■■■■■ 34.7
SMAD4-201ENST00000342988 COX20Q5RI15 118 aa15.77■□□□□ 0.11
SMAD4-201ENST00000342988 PHOSPHO2Q8TCD6 241 aa15.77■□□□□ 0.11
SMAD4-201ENST00000342988 RND1Q92730 232 aa15.77■□□□□ 0.11
SMAD4-201ENST00000342988 GHITMQ9H3K2 345 aa15.77■□□□□ 0.11
SMAD4-201ENST00000342988 A4GNTQ9UNA3 340 aa15.77■□□□□ 0.11
SMAD4-201ENST00000342988 SHANK1Q9Y566 2161 aa15.77■□□□□ 0.11
SMAD4-201ENST00000342988 TRAV38-1A0A0B4J264 116 aa15.77■□□□□ 0.11
SMAD4-201ENST00000342988 SNURFLB1AK76 121 aa15.77■□□□□ 0.11
SMAD4-201ENST00000342988 BCORP1Q8N888 145 aa15.77■□□□□ 0.11
SMAD4-201ENST00000342988 NAT2P11245 290 aa15.77■□□□□ 0.11
SMAD4-201ENST00000342988 PRDX2P32119 198 aa15.77■□□□□ 0.11
SMAD4-201ENST00000342988 FGF8P55075 233 aaPredicted RBP15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms