RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SEC61A1P61619 476 aaKnown RBP18.45■□□□□ 0.54
SDC3-202ENST00000339394 RPS27AP62979 156 aaKnown RBP18.45■□□□□ 0.54
SDC3-202ENST00000339394 IKZF1Q13422 519 aa18.45■□□□□ 0.54
SDC3-202ENST00000339394 FOXB2Q5VYV0 432 aa18.45■□□□□ 0.54
SDC3-202ENST00000339394 SPNS3Q6ZMD2 512 aa18.45■□□□□ 0.54
SDC3-202ENST00000339394 ZNF561Q8N587 486 aa18.45■□□□□ 0.54
SDC3-202ENST00000339394 OR8B3Q8NGG8 313 aa18.45■□□□□ 0.54
SDC3-202ENST00000339394 RAB39BQ96DA2 213 aa18.45■□□□□ 0.54
SDC3-202ENST00000339394 OR8B2Q96RD0 313 aa18.45■□□□□ 0.54
SDC3-202ENST00000339394 H7C1Q1 480 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 FCN3O75636 299 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 HEXAP06865 529 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 ZNF44P15621 663 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 CPT2P23786 658 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 LMO1P25800 156 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 EFNB2P52799 333 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 LINC00596Q86U02 117 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 LGALS14Q8TCE9 139 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 DYNC2LI1Q8TCX1 351 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 MRI1Q9BV20 369 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 LPAR5Q9H1C0 372 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 ABRACLQ9P1F3 81 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 RAB22AQ9UL26 194 aa18.44■□□□□ 0.54
SDC3-202ENST00000339394 SIRPB1O00241 398 aa18.43■□□□□ 0.54
SDC3-202ENST00000339394 DVL1O14640 695 aa18.43■□□□□ 0.54
SDC3-202ENST00000339394 PSPNO60542 156 aa18.43■□□□□ 0.54
SDC3-202ENST00000339394 ZNF737O75373 536 aa18.43■□□□□ 0.54
SDC3-202ENST00000339394 GABRR1P24046 479 aa18.43■□□□□ 0.54
SDC3-202ENST00000339394 PITPNBP48739 271 aa18.43■□□□□ 0.54
SDC3-202ENST00000339394 MPV17LQ2QL34 196 aa18.43■□□□□ 0.54
SDC3-202ENST00000339394 ASCC1Q8N9N2 400 aaKnown RBP18.43■□□□□ 0.54
SDC3-202ENST00000339394 OR5H6Q8NGV6 325 aa18.43■□□□□ 0.54
SDC3-202ENST00000339394 NICN1Q9BSH3 213 aa18.43■□□□□ 0.54
SDC3-202ENST00000339394 TM2D1Q9BX74 207 aa18.43■□□□□ 0.54
SDC3-202ENST00000339394 SVEP1Q4LDE5 3571 aa18.43■□□□□ 0.54
SDC3-202ENST00000339394 NDUFB3O43676 98 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 SCAND1P57086 179 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 C17orf107Q6ZR85 190 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 CHST4Q8NCG5 386 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 PTX4Q96A99 478 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 KCTD12Q96CX2 325 aaKnown RBP18.42■□□□□ 0.54
SDC3-202ENST00000339394 URM1Q9BTM9 101 aaKnown RBP18.42■□□□□ 0.54
SDC3-202ENST00000339394 SHARPINQ9H0F6 387 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 IFT22Q9H7X7 185 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 CLN8Q9UBY8 286 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 TRAV24A0A0B4J272 114 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 TMEM82A0PJX8 343 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 A6NHS1 94 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 FAM157AC9JC47 383 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 K7N7A8 449 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 SLC33A1O00400 549 aaPredicted RBP18.42■□□□□ 0.54
SDC3-202ENST00000339394 TK1P04183 234 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 ZNF182P17025 639 aaPredicted RBP18.42■□□□□ 0.54
SDC3-202ENST00000339394 RAB6AP20340 208 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 ESCO2Q56NI9 601 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 LRRC10Q5BKY1 277 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 WDR25Q64LD2 544 aaPredicted RBP18.42■□□□□ 0.54
SDC3-202ENST00000339394 FGFRL1Q8N441 504 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 TMEM185AQ8NFB2 350 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 POM121Q96HA1 1249 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 SLC25A10Q9UBX3 287 aaPredicted RBP18.42■□□□□ 0.54
SDC3-202ENST00000339394 SPATA2Q9UM82 520 aa18.42■□□□□ 0.54
SDC3-202ENST00000339394 A0A0A6YYD4 124 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A10PA6NDY2 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A18PA6NE21 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A16PA6NEW6 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A20PA6NIJ5 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A8PA6NJQ4 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A7PA6NKC0 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A22PA8MWA6 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A12PA8MX19 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A5PA8MXJ8 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A23PA8MXZ1 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 SMAD7O15105 426 aaKnown RBP18.41■□□□□ 0.54
SDC3-202ENST00000339394 PHF1O43189 567 aaPredicted RBP18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A15PP0C7V4 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A13PP0C7W8 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A14PP0C7W9 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM90A24PP0C7X0 464 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 SOX6P35712 828 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 NPY4RP50391 375 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 GNB2P62879 340 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 SIGIRRQ6IA17 410 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 BIVMQ86UB2 503 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM89BQ8N5H3 189 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 SNX22Q96L94 193 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 SSBP3Q9BWW4 388 aaPredicted RBP18.41■□□□□ 0.54
SDC3-202ENST00000339394 CHST6Q9GZX3 395 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 FAM234AQ9H0X4 552 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 ETV7Q9Y603 341 aa18.41■□□□□ 0.54
SDC3-202ENST00000339394 CREBBPQ92793 2442 aa18.4■□□□□ 0.54
SDC3-202ENST00000339394 ZFP36P26651 326 aaKnown RBP18.4■□□□□ 0.54
SDC3-202ENST00000339394 TMEM249Q2WGJ8 235 aa18.4■□□□□ 0.54
SDC3-202ENST00000339394 ATAD3CQ5T2N8 411 aa18.4■□□□□ 0.54
SDC3-202ENST00000339394 ST8SIA4Q92187 359 aa18.4■□□□□ 0.54
SDC3-202ENST00000339394 AP3S1Q92572 193 aa18.4■□□□□ 0.54
SDC3-202ENST00000339394 COX4I2Q96KJ9 171 aa18.4■□□□□ 0.54
SDC3-202ENST00000339394 HSPB6O14558 160 aa18.39■□□□□ 0.53
SDC3-202ENST00000339394 NDUFB7P17568 137 aa18.39■□□□□ 0.53
SDC3-202ENST00000339394 VEGFCP49767 419 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms