RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 SFTPDP35247 375 aa11.99□□□□□ -0.49
SYNE3-201ENST00000334258 CAPZBP47756 277 aa11.99□□□□□ -0.49
SYNE3-201ENST00000334258 EWSR1Q01844 656 aaKnown RBP eCLIP11.99□□□□□ -0.49
SYNE3-201ENST00000334258 RSPO4Q2I0M5 234 aaPredicted RBP11.99□□□□□ -0.49
SYNE3-201ENST00000334258 KIAA0895LQ68EN5 471 aa11.99□□□□□ -0.49
SYNE3-201ENST00000334258 C20orf196Q8IYI0 205 aa11.99□□□□□ -0.49
SYNE3-201ENST00000334258 LGI3Q8N145 548 aa11.99□□□□□ -0.49
SYNE3-201ENST00000334258 OR14L1PQ8NHC6 308 aa11.99□□□□□ -0.49
SYNE3-201ENST00000334258 FBRSQ9HAH7 460 aa11.99□□□□□ -0.49
SYNE3-201ENST00000334258 TP53TG5Q9Y2B4 290 aa11.99□□□□□ -0.49
SYNE3-201ENST00000334258 HS3ST3B1Q9Y662 390 aa11.99□□□□□ -0.49
SYNE3-201ENST00000334258 ONECUT2O95948 504 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 LSM6P62312 80 aaKnown RBP11.98□□□□□ -0.49
SYNE3-201ENST00000334258 ZNF266Q14584 549 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 IL13RA2Q14627 380 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 TMEM187Q14656 261 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 TIPARPQ7Z3E1 657 aaKnown RBP11.98□□□□□ -0.49
SYNE3-201ENST00000334258 TVP23CQ96ET8 276 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 MAGT1Q9H0U3 335 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 NECAP2Q9NVZ3 263 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 IGHV1OR15-9A0A0B4J2B8 117 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 EREGO14944 169 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 RAC1P63000 192 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 TMEM176BQ3YBM2 270 aaPredicted RBP11.98□□□□□ -0.49
SYNE3-201ENST00000334258 LANCL3Q6ZV70 420 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 OR11L1Q8NGX0 322 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 LIME1Q9H400 295 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 SHANK1Q9Y566 2161 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 A0A087WZY1 265 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 A0A1W2PNR3 127 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 LIPT2A6NK58 231 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 PHOX2AO14813 284 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 MAS1LP35410 378 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 RPL23AP62750 156 aaKnown RBP11.98□□□□□ -0.49
SYNE3-201ENST00000334258 VAMP2P63027 116 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 HIST2H3PS2Q5TEC6 136 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 LIAT1Q6ZQX7 453 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 OR2C3Q8N628 320 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 OR1N1Q8NGS0 311 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 DYRK2Q92630 601 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 SYT3Q9BQG1 590 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 SLC2A9Q9NRM0 540 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 PIGLQ9Y2B2 252 aa11.98□□□□□ -0.49
SYNE3-201ENST00000334258 A0A1W2PPC4 97 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 SMCO3A2RU48 225 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 CST7O76096 145 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 NPSP0C0P6 89 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 TRGC1P0CF51 173 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 MTCP1P56278 107 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 PKIAP61925 76 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 C17orf67Q0P5P2 114 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 MYBPHQ13203 477 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 RTL6Q6ICC9 239 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 FAM180AQ6UWF9 173 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 ST8SIA1Q92185 356 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 YPEL4Q96NS1 127 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 KLRF1Q9NZS2 232 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 TMED3Q9Y3Q3 217 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 HS3ST3A1Q9Y663 406 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 AHCTF1Q8WYP5 2266 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 E9PLN8 166 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 HSD17B6O14756 317 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 CYTIPO60759 359 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 NOVA1P51513 510 aaKnown RBP11.97□□□□□ -0.49
SYNE3-201ENST00000334258 HIST3H2BBQ8N257 126 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 SVIPQ8NHG7 77 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 HAS2Q92819 552 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 FAM210BQ96KR6 192 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 SMDT1Q9H4I9 107 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 ALKBH4Q9NXW9 302 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 CACNA1HO95180 2353 aa11.97□□□□□ -0.49
SYNE3-201ENST00000334258 SRP19P09132 144 aaKnown RBP11.96□□□□□ -0.49
SYNE3-201ENST00000334258 PLPP5Q8NEB5 264 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 NOXO1Q8NFA2 376 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 HPSE2Q8WWQ2 592 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 PACRGQ96M98 296 aaPredicted RBP11.96□□□□□ -0.49
SYNE3-201ENST00000334258 GOLT1BQ9Y3E0 138 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 MAP1BP46821 2468 aaKnown RBP11.96□□□□□ -0.49
SYNE3-201ENST00000334258 CCDC187A0A096LP49 1063 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 IGKV3D-11A0A0A0MRZ8 115 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 NXPH3O95157 252 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 FOLR1P15328 257 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 ZNF43P17038 809 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 FBLP22087 321 aaKnown RBP11.96□□□□□ -0.49
SYNE3-201ENST00000334258 CSNK1A1P48729 337 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 BLKP51451 505 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 ZNF41P51814 821 aaPredicted RBP11.96□□□□□ -0.49
SYNE3-201ENST00000334258 HERV-K104P61576 105 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 LPAL2Q16609 132 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 SLC25A24Q6NUK1 477 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 TMEM123Q8N131 208 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 SNX22Q96L94 193 aa11.96□□□□□ -0.49
SYNE3-201ENST00000334258 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 ANKUB1A6NFN9 424 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 TOX3O15405 576 aaPredicted RBP11.96□□□□□ -0.5
SYNE3-201ENST00000334258 SSSCA1O60232 199 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 PTBP3O95758 552 aaKnown RBP11.96□□□□□ -0.5
SYNE3-201ENST00000334258 DBHP09172 617 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 MDKP21741 143 aaPredicted RBP11.96□□□□□ -0.5
SYNE3-201ENST00000334258 EFNA3P52797 238 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms