RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TRAV8-7A0A075B6U6 113 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 A0A1W2PRU2 124 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 FITM1A5D6W6 292 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 ZNF716A6NP11 495 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 C4orf47A7E2U8 309 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 SPINT2O43291 252 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 SLC25A17O43808 307 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 CFDP00746 253 aaPredicted RBP5.71□□□□□ -1.5
VPS35-201ENST00000299138 LYL1P12980 280 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 GNG4P50150 75 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 MNX1P50219 401 aaPredicted RBP5.71□□□□□ -1.5
VPS35-201ENST00000299138 RPL27P61353 136 aaKnown RBP5.71□□□□□ -1.5
VPS35-201ENST00000299138 FUT5Q11128 374 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 IL24Q13007 206 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 IL13RA2Q14627 380 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 OR1C1Q15619 314 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 LHX8Q68G74 356 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 NPSR1Q6W5P4 371 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 RNF175Q8N4F7 328 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 SLC25A43Q8WUT9 341 aaPredicted RBP5.71□□□□□ -1.5
VPS35-201ENST00000299138 SCARF2Q96GP6 870 aaPredicted RBP5.71□□□□□ -1.5
VPS35-201ENST00000299138 TMEM101Q96IK0 257 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 KCNE5Q9UJ90 142 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 BOKQ9UMX3 212 aaPredicted RBP5.71□□□□□ -1.5
VPS35-201ENST00000299138 VDAC3Q9Y277 283 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 TIMM10BQ9Y5J6 103 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 EP400Q96L91 3159 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 CDC42EP2O14613 210 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 XRCC2O43543 280 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 CFIP05156 583 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 DEFB134Q4QY38 66 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 PRR7Q8TB68 274 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 BANF2Q9H503 90 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 NAA60Q9H7X0 242 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 MMP25Q9NPA2 562 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 IL23AQ9NPF7 189 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 MSRAQ9UJ68 235 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 SLC45A2Q9UMX9 530 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 RCL1Q9Y2P8 373 aaKnown RBP5.71□□□□□ -1.5
VPS35-201ENST00000299138 FLVCR1Q9Y5Y0 555 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 A0A087WWC5 75 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 DDAH2O95865 285 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 TGFAP01135 160 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 CD3DP04234 171 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 OR1D5P58170 312 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 TMEM25Q86YD3 366 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 OR52N5Q8NH56 324 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 DEFB126Q9BYW3 111 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 CBLN4Q9NTU7 201 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 PSG11Q9UQ72 335 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 EVPLQ92817 2033 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 TMEM238LA0A1B0GVL6 79 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 A6NJY4 79 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 ZNF785A8K8V0 405 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 FCMRO60667 390 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 KLF7O75840 302 aaPredicted RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 VAMP5O95183 116 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 FBP1P09467 338 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 BPIFB3P59826 476 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 RELBQ01201 579 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 CLN3Q13286 438 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 ANKRD33Q7Z3H0 272 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 OR10J5Q8NHC4 309 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 MYOZ3Q8TDC0 251 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 FAM216AQ8WUB2 273 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 MS4A3Q96HJ5 214 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 RIMS4Q9H426 269 aaPredicted RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 PGPEP1Q9NXJ5 209 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 B4GALT7Q9UBV7 327 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 CLDN16Q9Y5I7 305 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 PDCD11Q14690 1871 aaKnown RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 H3BP45 60 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 MASP2O00187 686 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 CRYBA1P05813 215 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 HIST1H1EP10412 219 aaKnown RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 SELEP16581 610 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 OTX1P32242 354 aaPredicted RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 FGF8P55075 233 aaPredicted RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 FOXO1Q12778 655 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 BSXQ3C1V8 233 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 PUSL1Q8N0Z8 303 aaKnown RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 NPEPL1Q8NDH3 523 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 SLC26A10Q8NG04 563 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 TM4SF19Q96DZ7 209 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 MRAP2Q96G30 205 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 CDCA3Q99618 268 aaPredicted RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 PKIBQ9C010 78 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 LOC102725191A0A1B0GVB3 256 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 OR2T8A6NH00 312 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 P2RY10O00398 339 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 UBE2CO00762 179 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 TIMP1P01033 207 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 CTXN2P0C2S0 81 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 RPS11P62280 158 aaKnown RBP eCLIP5.7□□□□□ -1.5
VPS35-201ENST00000299138 CACNG7P62955 275 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 OR8B8Q15620 311 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 TCTN1Q2MV58 587 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 COX19Q49B96 90 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 ZNF324BQ6AW86 544 aaPredicted RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 TRAT1Q6PIZ9 186 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms