RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ANGPTL5Q86XS5 388 aa15.81■□□□□ 0.12
CLN3-260ENST00000637578 CMTM4Q8IZR5 234 aa15.81■□□□□ 0.12
CLN3-260ENST00000637578 PARP16Q8N5Y8 322 aa15.81■□□□□ 0.12
CLN3-260ENST00000637578 CD177Q8N6Q3 437 aa15.81■□□□□ 0.12
CLN3-260ENST00000637578 NPRL2Q8WTW4 380 aa15.81■□□□□ 0.12
CLN3-260ENST00000637578 TMED9Q9BVK6 235 aa15.81■□□□□ 0.12
CLN3-260ENST00000637578 UNKLQ9H9P5 680 aaKnown RBP15.81■□□□□ 0.12
CLN3-260ENST00000637578 ONECUT1Q9UBC0 465 aa15.81■□□□□ 0.12
CLN3-260ENST00000637578 SLC7A11Q9UPY5 501 aa15.81■□□□□ 0.12
CLN3-260ENST00000637578 IGKV1-27A0A075B6S5 117 aa15.8■□□□□ 0.12
CLN3-260ENST00000637578 IGKV1-9A0A0C4DH69 117 aa15.8■□□□□ 0.12
CLN3-260ENST00000637578 SERPINA3P01011 423 aa15.8■□□□□ 0.12
CLN3-260ENST00000637578 CPEP16870 476 aa15.8■□□□□ 0.12
CLN3-260ENST00000637578 Q499Y3 187 aa15.8■□□□□ 0.12
CLN3-260ENST00000637578 AWAT1Q58HT5 328 aa15.8■□□□□ 0.12
CLN3-260ENST00000637578 PIP4P2Q8N4L2 257 aa15.8■□□□□ 0.12
CLN3-260ENST00000637578 OR13C9Q8NGT0 318 aa15.8■□□□□ 0.12
CLN3-260ENST00000637578 TRMT10AQ8TBZ6 339 aaKnown RBP15.8■□□□□ 0.12
CLN3-260ENST00000637578 H1FXQ92522 213 aaKnown RBP15.8■□□□□ 0.12
CLN3-260ENST00000637578 FCGR1BQ92637 280 aa15.8■□□□□ 0.12
CLN3-260ENST00000637578 TNFRSF14Q92956 283 aa15.8■□□□□ 0.12
CLN3-260ENST00000637578 OR14A2Q96R54 314 aa15.8■□□□□ 0.12
CLN3-260ENST00000637578 NR1H4Q96RI1 486 aaPredicted RBP15.8■□□□□ 0.12
CLN3-260ENST00000637578 M0R1W7 72 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 HOXA3O43365 443 aaPredicted RBP15.79■□□□□ 0.12
CLN3-260ENST00000637578 INMTO95050 263 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 CD2P06729 351 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 NDUFB7P17568 137 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 PSMB9P28065 219 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 PRDX2P32119 198 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 FUT6P51993 359 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 FOXL1Q12952 345 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 ASPHD2Q6ICH7 369 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 C16orf87Q6PH81 154 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 SERPINA12Q8IW75 414 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 ZNF561Q8N587 486 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 TMEM86BQ8N661 226 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 TMEM203Q969S6 136 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 ZDHHC16Q969W1 377 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 ORAI1Q96D31 301 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 A0A087WXM4 84 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 TRBV23-1A0A0A0MS06 115 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 FAM230AA0A1W2PPH8 454 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 HAX1O00165 279 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 NXPH2O95156 264 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 ATF1P18846 271 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 RPS25P62851 125 aaKnown RBP15.79■□□□□ 0.12
CLN3-260ENST00000637578 INSL4Q14641 139 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 CNN3Q15417 329 aaKnown RBP15.79■□□□□ 0.12
CLN3-260ENST00000637578 NEDD8Q15843 81 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 SSX1Q16384 188 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 MS4A15Q8N5U1 240 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 OR5D14Q8NGL3 314 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 ZCCHC4Q9H5U6 513 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 TAS2R4Q9NYW5 299 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 MTCH1Q9NZJ7 389 aa15.79■□□□□ 0.12
CLN3-260ENST00000637578 TRBV5-7A0A0A0MS05 114 aa15.78■□□□□ 0.12
CLN3-260ENST00000637578 MELTFP08582 738 aa15.78■□□□□ 0.12
CLN3-260ENST00000637578 C3orf56Q8N813 242 aa15.78■□□□□ 0.12
CLN3-260ENST00000637578 DNAAF1Q8NEP3 725 aa15.78■□□□□ 0.12
CLN3-260ENST00000637578 TMEM185AQ8NFB2 350 aa15.78■□□□□ 0.12
CLN3-260ENST00000637578 DERL3Q96Q80 235 aa15.78■□□□□ 0.12
CLN3-260ENST00000637578 ELL3Q9HB65 397 aaPredicted RBP15.78■□□□□ 0.12
CLN3-260ENST00000637578 POMT1Q9Y6A1 747 aa15.78■□□□□ 0.12
CLN3-260ENST00000637578 A0A0U1RQK1 487 aa15.77■□□□□ 0.11
CLN3-260ENST00000637578 A0A1W2PPK0 400 aa15.77■□□□□ 0.11
CLN3-260ENST00000637578 RNASEK-C17orf49H0YIS7 233 aa15.77■□□□□ 0.11
CLN3-260ENST00000637578 AZGP1P25311 298 aaKnown RBP15.77■□□□□ 0.11
CLN3-260ENST00000637578 GUCA2AQ02747 115 aa15.77■□□□□ 0.11
CLN3-260ENST00000637578 ACSM3Q53FZ2 586 aa15.77■□□□□ 0.11
CLN3-260ENST00000637578 OR51A2Q8NGJ7 313 aa15.77■□□□□ 0.11
CLN3-260ENST00000637578 METTL8Q9H825 291 aaKnown RBP15.77■□□□□ 0.11
CLN3-260ENST00000637578 SIRT7Q9NRC8 400 aa15.77■□□□□ 0.11
CLN3-260ENST00000637578 SF3B6Q9Y3B4 125 aaKnown RBP15.77■□□□□ 0.11
CLN3-260ENST00000637578 F8VVB4 439 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 F8VWA3 439 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 PIN1P1O15428 100 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 SULT1B1O43704 296 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 SC5DO75845 299 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 KNG1P01042 644 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 OCMP0CE72 109 aaPredicted RBP15.76■□□□□ 0.11
CLN3-260ENST00000637578 PRKACBP22694 351 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 GABRA5P31644 462 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 ZNF529Q6P280 563 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 LDLRAD3Q86YD5 345 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 PDZD9Q8IXQ8 264 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 SSMEM1Q8WWF3 244 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 MUL1Q969V5 352 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 SPSB1Q96BD6 273 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 BORCS8Q96FH0 119 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 CEP19Q96LK0 163 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 FAM234AQ9H0X4 552 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 SEBOXQ9HB31 216 aaPredicted RBP15.76■□□□□ 0.11
CLN3-260ENST00000637578 C19orf12Q9NSK7 152 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 NDUFB11Q9NX14 153 aa15.76■□□□□ 0.11
CLN3-260ENST00000637578 TRAV8-7A0A075B6U6 113 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 A0A1W2PQ09 198 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 TRIM64CA6NLI5 447 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 RAB3AP20336 220 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 MAPK3P27361 379 aaPredicted RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms