RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 AVPP01185 164 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 CALCBP10092 127 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 PSMB9P28065 219 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 PTGFRP43088 359 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 FABP5Q01469 135 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 ASCL4Q6XD76 172 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 C1orf229Q6ZS94 237 aaPredicted RBP13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 IL17RELQ6ZVW7 336 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 BTN2A1Q7KYR7 527 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 ZNF561Q8N587 486 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 PNLDC1Q8NA58 520 aaKnown RBP13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 NUDT16L1Q9BRJ7 211 aaKnown RBP13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 HMG20AQ9NP66 347 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 SLC25A10Q9UBX3 287 aaPredicted RBP13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 METRNQ9UJH8 293 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 ZFHX3Q15911 3703 aa13.71□□□□□ -0.22
CCDC28A-202ENST00000611852 KIR2DS1A0A191URI9 304 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 ECDO95905 644 aaPredicted RBP13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 PRKACAP17612 351 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 ADRA2CP18825 462 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 SRMP19623 302 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 CAV3P56539 151 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 ZNF146Q15072 292 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 CHRFAM7AQ494W8 412 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 HSD17B12Q53GQ0 312 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 SPIN3Q5JUX0 258 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 FIP1L1Q6UN15 594 aaKnown RBP13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 BTNL3Q6UXE8 466 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 LYPD6Q86Y78 171 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 CDH26Q8IXH8 852 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 NKAIN3Q8N8D7 197 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 TMEM185AQ8NFB2 350 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 PHYHIPQ92561 330 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 BEX2Q9BXY8 128 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 C7orf69Q9H7B7 122 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 SEBOXQ9HB31 216 aaPredicted RBP13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 TCF7L1Q9HCS4 588 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 LPAR3Q9UBY5 353 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 OPN4Q9UHM6 478 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 NF1P21359 2839 aa13.7□□□□□ -0.22
CCDC28A-202ENST00000611852 CCRL2O00421 344 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 ENSAO43768 121 aaKnown RBP13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 CDRT1O95170 752 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 HNF1AP20823 631 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 DUSP1P28562 367 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 ALDH3B2P48448 385 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 PAX8Q06710 450 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 NEDD8Q15843 81 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 ELP2Q6IA86 826 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 CD200R1LQ6Q8B3 271 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 LRRTM1Q86UE6 522 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 JAGN1Q8N5M9 183 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 ANK3Q12955 4377 aaKnown RBP13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 MEGF11A6BM72 1044 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 HAND1O96004 215 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 CHRM2P08172 466 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 NDUFB7P17568 137 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 MTNR1BP49286 362 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 SNU13P55769 128 aaKnown RBP13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 FGF12P61328 243 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 COL10A1Q03692 680 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 RSU1Q15404 277 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 SYT6Q5T7P8 510 aaPredicted RBP13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 GPR141Q7Z602 305 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 Q8NFD4 153 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 DCTN5Q9BTE1 182 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 CNTD2Q9H8S5 307 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 ELL3Q9HB65 397 aaPredicted RBP13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 IL36GQ9NZH8 169 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 RPUSD1Q9UJJ7 312 aaKnown RBP13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 GSTK1Q9Y2Q3 226 aa13.69□□□□□ -0.22
CCDC28A-202ENST00000611852 ZNF737O75373 536 aa13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 ARL6IP5O75915 188 aa13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 LIPFP07098 398 aa13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 HOXB4P17483 251 aaPredicted RBP13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 BMXP51813 675 aa13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 CAPZA1P52907 286 aa13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 ASCC1Q8N9N2 400 aaKnown RBP13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 LY6G5BQ8NDX9 201 aa13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 OR10K1Q8NGX5 313 aa13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 H1FXQ92522 213 aaKnown RBP13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 MUL1Q969V5 352 aa13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 MRI1Q9BV20 369 aa13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 FAM234AQ9H0X4 552 aa13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 ING4Q9UNL4 249 aa13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 AUP1Q9Y679 476 aa13.68□□□□□ -0.22
CCDC28A-202ENST00000611852 NAV3Q8IVL0 2385 aa13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 K7N7A8 449 aa13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 TK1P04183 234 aa13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 JUNBP17275 347 aaPredicted RBP13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 CALRP27797 417 aaKnown RBP13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 C17orf107Q6ZR85 190 aa13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 OR4D6Q8NGJ1 314 aa13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 C8orf46Q8TAG6 207 aa13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 S100A13Q99584 98 aa13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 UQCC2Q9BRT2 126 aa13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 SLITRK2Q9H156 845 aa13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 METTL9Q9H1A3 318 aa13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 GLS2Q9UI32 602 aa13.67□□□□□ -0.22
CCDC28A-202ENST00000611852 MRPS28Q9Y2Q9 187 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms