RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 C11orf91Q3C1V1 193 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 LRRC10Q5BKY1 277 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 SPIN3Q5JUX0 258 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 C1orf100Q5SVJ3 147 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 C22orf42Q6IC83 251 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 Q71RC1 249 aaPredicted RBP16.06■□□□□ 0.16
UPF1-209ENST00000600310 ZNF561Q8N587 486 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 OR4D6Q8NGJ1 314 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 S100A13Q99584 98 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 METTL9Q9H1A3 318 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 OR51E2Q9H255 320 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 EXOSC4Q9NPD3 245 aaKnown RBP16.06■□□□□ 0.16
UPF1-209ENST00000600310 TXNL4BQ9NX01 149 aaKnown RBP16.06■□□□□ 0.16
UPF1-209ENST00000600310 OR5V1Q9UGF6 321 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 METRNQ9UJH8 293 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 KCNS2Q9ULS6 477 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 MRPS28Q9Y2Q9 187 aaKnown RBP16.06■□□□□ 0.16
UPF1-209ENST00000600310 MALRD1Q5VYJ5 2156 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 GPR37O15354 613 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 ZNF780AO75290 641 aaPredicted RBP16.05■□□□□ 0.16
UPF1-209ENST00000600310 HAND1O96004 215 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 CHRM2P08172 466 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 GADD45AP24522 165 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 PAX2Q02962 417 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 IKZF1Q13422 519 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 GLIPR1L1Q6UWM5 242 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 ZNRF1Q8ND25 227 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 OR10K1Q8NGX5 313 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 YIPF6Q96EC8 236 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 GFI1Q99684 422 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 MRPS26Q9BYN8 205 aaKnown RBP16.05■□□□□ 0.16
UPF1-209ENST00000600310 MMP26Q9NRE1 261 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 PCDHB16Q9NRJ7 776 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 SLC25A10Q9UBX3 287 aaPredicted RBP16.05■□□□□ 0.16
UPF1-209ENST00000600310 GLS2Q9UI32 602 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 GSTK1Q9Y2Q3 226 aa16.05■□□□□ 0.16
UPF1-209ENST00000600310 AK6Q9Y3D8 172 aaKnown RBP16.05■□□□□ 0.16
UPF1-209ENST00000600310 ABCA2Q9BZC7 2435 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 LOC105371242A0A075B767 164 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 SHISA3A0PJX4 238 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 HTR3BO95264 441 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 ECDO95905 644 aaPredicted RBP16.04■□□□□ 0.16
UPF1-209ENST00000600310 GATA3P23771 443 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 MYL9P24844 172 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 DUSP1P28562 367 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 PSMD7P51665 324 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 CAV3P56539 151 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 COL10A1Q03692 680 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 GPR176Q14439 515 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 CD276Q5ZPR3 534 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 AWAT2Q6E213 333 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 FGFRL1Q8N441 504 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 TMEM185AQ8NFB2 350 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 OR51T1Q8NGJ9 327 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 TBC1D15Q8TC07 691 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 ST8SIA4Q92187 359 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 DACT3Q96B18 629 aaPredicted RBP16.04■□□□□ 0.16
UPF1-209ENST00000600310 C1orf147Q96MC9 270 aaPredicted RBP16.04■□□□□ 0.16
UPF1-209ENST00000600310 FAM234AQ9H0X4 552 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 GHRLQ9UBU3 117 aa16.04■□□□□ 0.16
UPF1-209ENST00000600310 A0A0G2JMP0 313 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 A0A0X1KG70 313 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 C22orf46C9J442 243 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 PDCD5O14737 125 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 ZNF737O75373 536 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 CSTBP04080 98 aaKnown RBP16.03■□□□□ 0.16
UPF1-209ENST00000600310 SNU13P55769 128 aaKnown RBP16.03■□□□□ 0.16
UPF1-209ENST00000600310 SLC22A6Q4U2R8 563 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 GDPGP1Q6ZNW5 385 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 OR4M2Q8NGB6 313 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 RAB40AQ8WXH6 277 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 CHCHD6Q9BRQ6 235 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 TMEM160Q9NX00 188 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 INSIG2Q9Y5U4 225 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 V9GY05 133 aa16.03■□□□□ 0.16
UPF1-209ENST00000600310 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.03■□□□□ 0.162e-10■■■■□ 22.9
UPF1-209ENST00000600310 NIPBLQ6KC79 2804 aaeCLIP16.02■□□□□ 0.16
UPF1-209ENST00000600310 IGHV2-70DA0A0C4DH43 119 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 KIR2DS1A0A191URI9 304 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 K7N7A8 449 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 SH2D1BO14796 132 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 SLC22A1O15245 554 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 GTF2F2P13984 249 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 SERPINA2P20848 420 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 LMO1P25800 156 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 HTR2CP28335 458 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 IL13RA2Q14627 380 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 TIMM50Q3ZCQ8 353 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 NHLRC3Q5JS37 347 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 DCAF12L2Q5VW00 463 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 Q6P435 159 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 BTN2A1Q7KYR7 527 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 OSR2Q8N2R0 312 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 OR6M1Q8NGM8 313 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 MRPS24Q96EL2 167 aaKnown RBP16.02■□□□□ 0.16
UPF1-209ENST00000600310 POM121Q96HA1 1249 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 SNX22Q96L94 193 aa16.02■□□□□ 0.16
UPF1-209ENST00000600310 RPUSD1Q9UJJ7 312 aaKnown RBP16.02■□□□□ 0.16
UPF1-209ENST00000600310 A0A1W2PP11 408 aa16.01■□□□□ 0.15
UPF1-209ENST00000600310 TMEM82A0PJX8 343 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms