RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 PHF21AQ96BD5 680 aa10.13□□□□□ -0.79
SHKBP1-213ENST00000597325 URM1Q9BTM9 101 aaKnown RBP10.13□□□□□ -0.79
SHKBP1-213ENST00000597325 NXF2Q9GZY0 626 aaKnown RBP10.13□□□□□ -0.79
SHKBP1-213ENST00000597325 SHARPINQ9H0F6 387 aa10.13□□□□□ -0.79
SHKBP1-213ENST00000597325 MTCH1Q9NZJ7 389 aa10.13□□□□□ -0.79
SHKBP1-213ENST00000597325 RNF7Q9UBF6 113 aa10.13□□□□□ -0.79
SHKBP1-213ENST00000597325 RAB22AQ9UL26 194 aa10.13□□□□□ -0.79
SHKBP1-213ENST00000597325 PEX16Q9Y5Y5 336 aa10.13□□□□□ -0.79
SHKBP1-213ENST00000597325 NPTNQ9Y639 398 aa10.13□□□□□ -0.79
SHKBP1-213ENST00000597325 IGKV1-12A0A0C4DH73 117 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 METTL21EPA6NDL7 271 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 TMEM14DPA8MWL7 114 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 FAM25AB3EWG3 89 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 FAM25CB3EWG5 89 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 FAM25GB3EWG6 89 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 OVOL3O00110 214 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 AKR7A2O43488 359 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 CDC14BO60729 498 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 HPGDSO60760 199 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 NOS1APO75052 506 aaPredicted RBP10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 IGKV1D-12P01611 117 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 HPXP02790 462 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 MGMTP16455 207 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 PRKACAP17612 351 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 GLRA1P23415 457 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 GMFBP60983 142 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 ZNF181Q2M3W8 571 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 ELP2Q6IA86 826 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 C11orf53Q8IXP5 236 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 FAM58AQ8N1B3 248 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 OSR2Q8N2R0 312 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 BOLLQ8N9W6 283 aaKnown RBP10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 OR5H6Q8NGV6 325 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 CCL17Q92583 94 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 PTX4Q96A99 478 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 MRPS24Q96EL2 167 aaKnown RBP10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 C1orf147Q96MC9 270 aaPredicted RBP10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 ZNF488Q96MN9 340 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 NRIP2Q9BQI9 281 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 BANF2Q9H503 90 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 TMEM106BQ9NUM4 274 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 RBFOX1Q9NWB1 397 aaKnown RBP10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 RHBDL2Q9NX52 303 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 RASL12Q9NYN1 266 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 TREM2Q9NZC2 230 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 DNAJB11Q9UBS4 358 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 FBLN5Q9UBX5 448 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 MALRD1Q5VYJ5 2156 aa10.12□□□□□ -0.79
SHKBP1-213ENST00000597325 SCGNO76038 276 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 CYB5R3P00387 301 aaPredicted RBP10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 SFTPBP07988 381 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 ACAA1P09110 424 aaPredicted RBP10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 DAOP14920 347 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 CPT2P23786 658 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 CFHR2P36980 270 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 TALDO1P37837 337 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 NPBWR2P48146 333 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 EFNA4P52798 201 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 SNU13P55769 128 aaKnown RBP10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 RBM11P57052 281 aaKnown RBP10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 FGF12P61328 243 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 MRPS11P82912 194 aaKnown RBP10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 QRFPP83859 136 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 UNC119Q13432 240 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 TMEM249Q2WGJ8 235 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 OR10K2Q6IF99 312 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 PEG10Q86TG7 708 aaKnown RBP10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 LRRC28Q86X40 367 aaPredicted RBP10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 LAX1Q8IWV1 398 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 TMEM104Q8NE00 496 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 RAB40AQ8WXH6 277 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 RDH5Q92781 318 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 CMTM3Q96MX0 182 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 GAL3ST1Q99999 423 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 SELENOIQ9C0D9 397 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 ATG5Q9H1Y0 275 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 BARX1Q9HBU1 254 aaPredicted RBP10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 GLS2Q9UI32 602 aa10.11□□□□□ -0.79
SHKBP1-213ENST00000597325 A0A1W2PP11 408 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 SRRM5B3KS81 715 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 CLDN25C9JDP6 229 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 CTDSP2O14595 271 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 WNT9BO14905 357 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 LDLRAD4O15165 306 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 APOA1P02647 267 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 CD80P33681 288 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 PMELP40967 661 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 EFNB2P52799 333 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 ERVK11-1P61568 191 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 RPS27AP62979 156 aaKnown RBP10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 SPIN3Q5JUX0 258 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 PRR31Q5SQ13 230 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 LINC00596Q86U02 117 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 FAM90A1Q86YD7 464 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 OR56B1Q8NGI3 324 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 OR51T1Q8NGJ9 327 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 SLC25A38Q96DW6 304 aa10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 S100A16Q96FQ6 103 aaKnown RBP10.1□□□□□ -0.79
SHKBP1-213ENST00000597325 TIMD4Q96H15 378 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms