RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 KDM4BO94953 1096 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 HAND1O96004 215 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 CHRM2P08172 466 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 RAB3AP20336 220 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 RPL31P62899 125 aaKnown RBP12.88□□□□□ -0.35
LIG3-215ENST00000592690 ACTG1P63261 375 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 ZNF273Q14593 569 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 SLC9A3R2Q15599 337 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 KISS1Q15726 138 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 C6orf141Q5SZD1 244 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 METAP1DQ6UB28 335 aaPredicted RBP12.88□□□□□ -0.35
LIG3-215ENST00000592690 PIP4P2Q8N4L2 257 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 SGCDQ92629 289 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 GHSRQ92847 366 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 TMEM106AQ96A25 262 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 PGLYRP3Q96LB9 341 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 NKX3-1Q99801 234 aaPredicted RBP12.88□□□□□ -0.35
LIG3-215ENST00000592690 FAM234AQ9H0X4 552 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 PRDM13Q9H4Q3 707 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 NEK6Q9HC98 313 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 HMG20AQ9NP66 347 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 ZNF281Q9Y2X9 895 aa12.88□□□□□ -0.35
LIG3-215ENST00000592690 A0A0U1RQK1 487 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 PNMA8CA0A1B0GUJ8 204 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 A0A1W2PRD5 423 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 A0A1W2PRF3 423 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 A0A1W2PRM7 423 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 HOXA3O43365 443 aaPredicted RBP12.87□□□□□ -0.35
LIG3-215ENST00000592690 CD2P06729 351 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 CCL3L1P16619 93 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 WNT4P56705 351 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 RPS11P62280 158 aaKnown RBP eCLIP12.87□□□□□ -0.35
LIG3-215ENST00000592690 TMEM200BQ69YZ2 307 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 FIP1L1Q6UN15 594 aaKnown RBP12.87□□□□□ -0.35
LIG3-215ENST00000592690 IZUMO2Q6UXV1 221 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 C1orf122Q6ZSJ8 110 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 PNKDQ8N490 385 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 ZDHHC16Q969W1 377 aa12.87□□□□□ -0.35
LIG3-215ENST00000592690 METTL8Q9H825 291 aaKnown RBP12.87□□□□□ -0.35
LIG3-215ENST00000592690 PAK1IP1Q9NWT1 392 aaPredicted RBP12.87□□□□□ -0.35
LIG3-215ENST00000592690 TRBV5-5A0A0J9YX44 114 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 MEX3AA1L020 520 aaKnown RBP12.86□□□□□ -0.35
LIG3-215ENST00000592690 GABRPO00591 440 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 PSPNO60542 156 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 CDK1P06493 297 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 RNASE1P07998 156 aaKnown RBP12.86□□□□□ -0.35
LIG3-215ENST00000592690 TMEM225BP0DP42 221 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 MYF6P23409 242 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 BLMHQ13867 455 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 ZNF146Q15072 292 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 SPIN3Q5JUX0 258 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 HCP5Q6MZN7 132 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 C17orf107Q6ZR85 190 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 SATL1Q86VE3 508 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 SAXO1Q8IYX7 474 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 OR8H2Q8N162 312 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 NANOGP1Q8N7R0 232 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 OR52N4Q8NGI2 321 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 CHST6Q9GZX3 395 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 UNKLQ9H9P5 680 aaKnown RBP12.86□□□□□ -0.35
LIG3-215ENST00000592690 ZMAT3Q9HA38 289 aaKnown RBP12.86□□□□□ -0.35
LIG3-215ENST00000592690 SEBOXQ9HB31 216 aaPredicted RBP12.86□□□□□ -0.35
LIG3-215ENST00000592690 GSTK1Q9Y2Q3 226 aa12.86□□□□□ -0.35
LIG3-215ENST00000592690 PTGES3LE9PB15 166 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 CLDN34H7C241 214 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 SIRPB1O00241 398 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 NPFFO15130 113 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 MELTFP08582 738 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 GABRR1P24046 479 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 EDDM3BP56851 147 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 TAS2R43P59537 309 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 ERVFRD-1P60508 538 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 GUCA2AQ02747 115 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 EDDM3AQ14507 147 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 YIF1BQ5BJH7 314 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 NCR3LG1Q68D85 454 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 Q6YL49 198 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 GDPD3Q7L5L3 318 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 TCF23Q7RTU1 214 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 C11orf42Q8N5U0 333 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 TPRX1Q8N7U7 411 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 ZSCAN4Q8NAM6 433 aaPredicted RBP12.85□□□□□ -0.35
LIG3-215ENST00000592690 OR4S1Q8NGB4 309 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 SLC25A28Q96A46 364 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 SNX22Q96L94 193 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 GPER1Q99527 375 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 ANKRD60Q9BZ19 345 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 VCX3BQ9H321 246 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 TNFRSF19Q9NS68 423 aa12.85□□□□□ -0.35
LIG3-215ENST00000592690 TENM1Q9UKZ4 2725 aa12.84□□□□□ -0.35
LIG3-215ENST00000592690 TMEM89A2RUT3 159 aa12.84□□□□□ -0.35
LIG3-215ENST00000592690 MAGEA13PA6NCF6 341 aa12.84□□□□□ -0.35
LIG3-215ENST00000592690 ATP6V1G2O95670 118 aa12.84□□□□□ -0.35
LIG3-215ENST00000592690 OR2H2O95918 312 aa12.84□□□□□ -0.35
LIG3-215ENST00000592690 CELP19835 753 aa12.84□□□□□ -0.35
LIG3-215ENST00000592690 EEF1B2P24534 225 aaKnown RBP12.84□□□□□ -0.35
LIG3-215ENST00000592690 OR3A1P47881 315 aa12.84□□□□□ -0.35
LIG3-215ENST00000592690 DLX6P56179 175 aa12.84□□□□□ -0.35
LIG3-215ENST00000592690 GRK1Q15835 563 aa12.84□□□□□ -0.35
LIG3-215ENST00000592690 Q499Y3 187 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms