RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 RNF144BQ7Z419 303 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 OR5D18Q8NGL1 313 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 TAF15Q92804 592 aaKnown RBP eCLIP19.55■□□□□ 0.72
SHMT1-206ENST00000579558 TMEM80Q96HE8 168 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 CHIAQ9BZP6 476 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 DCLRE1BQ9H816 532 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 CHCHD3Q9NX63 227 aaKnown RBP19.55■□□□□ 0.72
SHMT1-206ENST00000579558 SULT1B1O43704 296 aa19.54■□□□□ 0.72
SHMT1-206ENST00000579558 CCL3L1P16619 93 aa19.54■□□□□ 0.72
SHMT1-206ENST00000579558 SAA4P35542 130 aa19.54■□□□□ 0.72
SHMT1-206ENST00000579558 EDDM3BP56851 147 aa19.54■□□□□ 0.72
SHMT1-206ENST00000579558 ZNF273Q14593 569 aa19.54■□□□□ 0.72
SHMT1-206ENST00000579558 GDPD3Q7L5L3 318 aa19.54■□□□□ 0.72
SHMT1-206ENST00000579558 OR8H2Q8N162 312 aa19.54■□□□□ 0.72
SHMT1-206ENST00000579558 RGP1Q92546 391 aaPredicted RBP19.54■□□□□ 0.72
SHMT1-206ENST00000579558 SNX22Q96L94 193 aa19.54■□□□□ 0.72
SHMT1-206ENST00000579558 SEBOXQ9HB31 216 aaPredicted RBP19.54■□□□□ 0.72
SHMT1-206ENST00000579558 CLEC2DQ9UHP7 191 aa19.54■□□□□ 0.72
SHMT1-206ENST00000579558 SF3B6Q9Y3B4 125 aaKnown RBP19.54■□□□□ 0.72
SHMT1-206ENST00000579558 IGKV1-12A0A0C4DH73 117 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 hCG_1809904A0A1W2PP81 198 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 A0A1W2PPE2 198 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 A0A1W2PR64 198 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 A0A1W2PRV1 198 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 TMEM82A0PJX8 343 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 MEIOCA2RUB1 952 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 FAM181BA6NEQ2 426 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 ALX3O95076 343 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 IGKV1D-12P01611 117 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 IGHV4-59P01825 116 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 CRYBA1P05813 215 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 DUSP1P28562 367 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 IER3P46695 156 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 SOX2P48431 317 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 ACSM1Q08AH1 577 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 SPIN3Q5JUX0 258 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 HCP5Q6MZN7 132 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 RPS4Y2Q8TD47 263 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 GPR148Q8TDV2 347 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 GGHQ92820 318 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 HMG20AQ9NP66 347 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 BABAM2Q9NXR7 383 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 GLS2Q9UI32 602 aa19.53■□□□□ 0.72
SHMT1-206ENST00000579558 KDM4BO94953 1096 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 PAHP00439 452 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 GABRR1P24046 479 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 EDDM3AQ14507 147 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 ZNF146Q15072 292 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 CRIP3Q6Q6R5 217 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 C17orf107Q6ZR85 190 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 SAXO1Q8IYX7 474 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 OR52N1Q8NH53 320 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 DPAGT1Q9H3H5 408 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 HEXA-AS1Q9H8Q6 139 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 ZNRD1Q9P1U0 126 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 NKX1-2Q9UD57 310 aaPredicted RBP19.52■□□□□ 0.72
SHMT1-206ENST00000579558 GSTK1Q9Y2Q3 226 aa19.52■□□□□ 0.72
SHMT1-206ENST00000579558 SIRT4Q9Y6E7 314 aaPredicted RBP19.52■□□□□ 0.72
SHMT1-206ENST00000579558 EFCAB10A6NFE3 127 aa19.51■□□□□ 0.71
SHMT1-206ENST00000579558 CD2P06729 351 aa19.51■□□□□ 0.71
SHMT1-206ENST00000579558 RAB3AP20336 220 aa19.51■□□□□ 0.71
SHMT1-206ENST00000579558 GABPB1Q06547 395 aaPredicted RBP19.51■□□□□ 0.71
SHMT1-206ENST00000579558 ST3GAL4Q11206 333 aa19.51■□□□□ 0.71
SHMT1-206ENST00000579558 KISS1Q15726 138 aa19.51■□□□□ 0.71
SHMT1-206ENST00000579558 GRK1Q15835 563 aa19.51■□□□□ 0.71
SHMT1-206ENST00000579558 C11orf42Q8N5U0 333 aa19.51■□□□□ 0.71
SHMT1-206ENST00000579558 ZSCAN4Q8NAM6 433 aaPredicted RBP19.51■□□□□ 0.71
SHMT1-206ENST00000579558 CHST6Q9GZX3 395 aa19.51■□□□□ 0.71
SHMT1-206ENST00000579558 MEX3AA1L020 520 aaKnown RBP19.5■□□□□ 0.71
SHMT1-206ENST00000579558 OGG1O15527 345 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 XPNPEP2O43895 674 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 LALBAP00709 142 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 TMEM225BP0DP42 221 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 OMGP23515 440 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 ERVFRD-1P60508 538 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 SLC34A1Q06495 639 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 LAIR2Q6ISS4 152 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 OR52N4Q8NGI2 321 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 SMIM19Q96E16 107 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 RHOFQ9HBH0 211 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 EXOSC4Q9NPD3 245 aaKnown RBP19.5■□□□□ 0.71
SHMT1-206ENST00000579558 TAS2R4Q9NYW5 299 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 CNOT2Q9NZN8 540 aaKnown RBP19.5■□□□□ 0.71
SHMT1-206ENST00000579558 PCDHGB5Q9Y5G0 923 aa19.5■□□□□ 0.71
SHMT1-206ENST00000579558 BTBD17A6NE02 478 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 SIRPB1O00241 398 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 SH2D1BO14796 132 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 MAGEB3O15480 346 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 PSPNO60542 156 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 COX7A1P24310 79 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 DLX6P56179 175 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 ZP1P60852 638 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 MEF2CQ06413 473 aaPredicted RBP19.49■□□□□ 0.71
SHMT1-206ENST00000579558 MIDNQ504T8 468 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 ZNF529Q6P280 563 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 ZNF782Q6ZMW2 699 aaPredicted RBP19.49■□□□□ 0.71
SHMT1-206ENST00000579558 OR4S1Q8NGB4 309 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 OR51A2Q8NGJ7 313 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 PPP1R35Q8TAP8 253 aa19.49■□□□□ 0.71
SHMT1-206ENST00000579558 FBLIM1Q8WUP2 373 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms