RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 PPP1R35Q8TAP8 253 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 APH1BQ8WW43 257 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 SSMEM1Q8WWF3 244 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 ADAT3Q96EY9 351 aaPredicted RBP6.66□□□□□ -1.34
VPS53-214ENST00000572607 ZCCHC4Q9H5U6 513 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 ISG20L2Q9H9L3 353 aaKnown RBP6.66□□□□□ -1.34
VPS53-214ENST00000572607 ELL3Q9HB65 397 aaPredicted RBP6.66□□□□□ -1.34
VPS53-214ENST00000572607 HES4Q9HCC6 221 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 FGF20Q9NP95 211 aaPredicted RBP6.66□□□□□ -1.34
VPS53-214ENST00000572607 TNFRSF19Q9NS68 423 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 MRPS18AQ9NVS2 196 aaKnown RBP6.66□□□□□ -1.34
VPS53-214ENST00000572607 WNK2Q9Y3S1 2297 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 A0A0U1RQK1 487 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 NPFFO15130 113 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 CLIC3O95833 236 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 TK1P04183 234 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 CD2P06729 351 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 MELTFP08582 738 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 HCKP08631 526 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 EDDM3BP56851 147 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 ERVK11-1P61568 191 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 COL10A1Q03692 680 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 SMN1Q16637 294 aaKnown RBP6.65□□□□□ -1.34
VPS53-214ENST00000572607 CCDC58Q4VC31 144 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 AWAT1Q58HT5 328 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 C16orf87Q6PH81 154 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 SERPINA12Q8IW75 414 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 C8orf59Q8N0T1 100 aaPredicted RBP6.65□□□□□ -1.34
VPS53-214ENST00000572607 FAM58AQ8N1B3 248 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 CD177Q8N6Q3 437 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 OR51A4Q8NGJ6 313 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 OR5D14Q8NGL3 314 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 CNIH3Q8TBE1 160 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 TMEM80Q96HE8 168 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 JAM3Q9BX67 310 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 DPAGT1Q9H3H5 408 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 PRDM13Q9H4Q3 707 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 C19orf12Q9NSK7 152 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 MTCH1Q9NZJ7 389 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 EXOSC1Q9Y3B2 195 aaKnown RBP6.65□□□□□ -1.34
VPS53-214ENST00000572607 SF3B6Q9Y3B4 125 aaKnown RBP6.65□□□□□ -1.34
VPS53-214ENST00000572607 SOX21Q9Y651 276 aaPredicted RBP6.65□□□□□ -1.34
VPS53-214ENST00000572607 POMT1Q9Y6A1 747 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 HSPE1-MOB4S4R3N1 261 aa6.65□□□□□ -1.34
VPS53-214ENST00000572607 ARHGAP32A7KAX9 2087 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 IGKV1-27A0A075B6S5 117 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 IGKV1-9A0A0C4DH69 117 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 A0A1W2PRD5 423 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 A0A1W2PRF3 423 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 A0A1W2PRM7 423 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 MEIOCA2RUB1 952 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 EFCAB10A6NFE3 127 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 RNASEK-C17orf49H0YIS7 233 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 K7N7A8 449 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 SULT1B1O43704 296 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 ANGPTL7O43827 346 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 WBP4O75554 376 aaKnown RBP6.64□□□□□ -1.35
VPS53-214ENST00000572607 ZFPL1O95159 310 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 HAND1O96004 215 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 MT-ND2P03891 347 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 LIMS3P0CW19 117 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 LIMS4P0CW20 117 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 PIPP12273 146 aaPredicted RBP6.64□□□□□ -1.35
VPS53-214ENST00000572607 PRKACAP17612 351 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 RAB3AP20336 220 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 GABRR1P24046 479 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 CFPP27918 469 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 CAPGP40121 348 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 UBE2E1P51965 193 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 SNU13P55769 128 aaKnown RBP6.64□□□□□ -1.35
VPS53-214ENST00000572607 ERVFRD-1P60508 538 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 ACSM1Q08AH1 577 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 PDZK1IP1Q13113 114 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 SPIN3Q5JUX0 258 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 OGFRL1Q5TC84 451 aaPredicted RBP6.64□□□□□ -1.35
VPS53-214ENST00000572607 RPL22L1Q6P5R6 122 aaKnown RBP6.64□□□□□ -1.35
VPS53-214ENST00000572607 LDLRAD3Q86YD5 345 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 OR8H2Q8N162 312 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 Q8N7P7 452 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 OR4M1Q8NGD0 313 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 OR5D18Q8NGL1 313 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 OR10AC1Q8NH08 325 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 GPR148Q8TDV2 347 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 RFT1Q96AA3 541 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 SNX22Q96L94 193 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 C1orf147Q96MC9 270 aaPredicted RBP6.64□□□□□ -1.35
VPS53-214ENST00000572607 GPER1Q99527 375 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 PDCD1LG2Q9BQ51 273 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 DCLRE1BQ9H816 532 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 HEXA-AS1Q9H8Q6 139 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 RHOFQ9HBH0 211 aa6.64□□□□□ -1.35
VPS53-214ENST00000572607 EXOSC4Q9NPD3 245 aaKnown RBP6.64□□□□□ -1.35
VPS53-214ENST00000572607 RBFOX1Q9NWB1 397 aaKnown RBP6.64□□□□□ -1.35
VPS53-214ENST00000572607 DIMT1Q9UNQ2 313 aaKnown RBP6.64□□□□□ -1.35
VPS53-214ENST00000572607 A0A1B0GUS0 222 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 hADV38S2A0JD32 116 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 FUOMA2VDF0 154 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 ANKRD65E5RJM6 399 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 E9PI62 339 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 MYL12BO14950 172 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms