RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 PRR14LQ5THK1 2151 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 CCDC168Q8NDH2 2452 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 CADP27708 2225 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 TMED7-TICAM2A0A0A6YYA0 188 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 A0A0J9YW62 118 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 B4DXG7 233 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 LRRN3E7EW58 273 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 C19orf84I3L1E1 186 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 DENRO43583 198 aaKnown RBP5.08□□□□□ -1.6
VPS53-212ENST00000572259 SYNGR3O43761 229 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 ATP5LO75964 103 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 TSPAN13O95857 204 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 IFNA14P01570 189 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 RPS4Y1P22090 263 aaKnown RBP5.08□□□□□ -1.6
VPS53-212ENST00000572259 ID1P41134 155 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 DLX5P56178 289 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 AP3S2P59780 193 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 SLC35A1P78382 337 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 POU3F1Q03052 451 aaPredicted RBP5.08□□□□□ -1.6
VPS53-212ENST00000572259 TLE4Q04727 773 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 TFF3Q07654 80 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 FUT5Q11128 374 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 MADCAM1Q13477 382 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 TOMM34Q15785 309 aaPredicted RBP5.08□□□□□ -1.6
VPS53-212ENST00000572259 ZNF74Q16587 644 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 TRMT5Q32P41 509 aaKnown RBP5.08□□□□□ -1.6
VPS53-212ENST00000572259 NDUFAF6Q330K2 333 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 GTDC1Q4AE62 458 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 DMRTC1Q5HYR2 192 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 C5orf46Q6UWT4 87 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 BTNL3Q6UXE8 466 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 Q6ZSR3 168 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 TMPPEQ6ZT21 453 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 ARPINQ7Z6K5 226 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 GLCCI1Q86VQ1 547 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 ZNF100Q8IYN0 542 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 CADM2Q8N3J6 435 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 PRR26Q8N8Z3 221 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 OR6K3Q8NGY3 331 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 DLX4Q92988 240 aaPredicted RBP5.08□□□□□ -1.6
VPS53-212ENST00000572259 LRRC58Q96CX6 371 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 STARD4Q96DR4 205 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 TAPBPLQ9BX59 468 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 RBM38Q9H0Z9 239 aaKnown RBP5.08□□□□□ -1.6
VPS53-212ENST00000572259 IKZF5Q9H5V7 419 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 TMEM27Q9HBJ8 222 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 SAR1AQ9NR31 198 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 CTPS2Q9NRF8 586 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 ZNF226Q9NYT6 803 aa5.08□□□□□ -1.6
VPS53-212ENST00000572259 EXOSC1Q9Y3B2 195 aaKnown RBP5.08□□□□□ -1.6
VPS53-212ENST00000572259 DSCAMO60469 2012 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 DCHS2Q6V1P9 2916 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 APCP25054 2843 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 DSPPQ9NZW4 1301 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 GMNCA6NCL1 334 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 CLDN24A6NM45 220 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 ZNF724A8MTY0 619 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 C16orf97H3BN30 126 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 MRASO14807 208 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 OR2T1O43869 369 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 SS18L1O75177 396 aaPredicted RBP5.07□□□□□ -1.6
VPS53-212ENST00000572259 KHDRBS3O75525 346 aaKnown RBP5.07□□□□□ -1.6
VPS53-212ENST00000572259 TNFSF13O75888 250 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 AQP8O94778 261 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 NTN1O95631 604 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 PMS2P2O95744 297 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 IFNA6P05013 189 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 GKN3PP0CG01 181 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 TNFRSF1BP20333 461 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 NPR2P20594 1047 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 CEACAM3P40198 252 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 CD79BP40259 229 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 RAG2P55895 527 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 CAPRIN1Q14444 709 aaKnown RBP5.07□□□□□ -1.6
VPS53-212ENST00000572259 TSC22D1Q15714 1073 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 ZNF239Q16600 458 aaKnown RBP5.07□□□□□ -1.6
VPS53-212ENST00000572259 MOGQ16653 247 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 ZNF672Q499Z4 452 aaPredicted RBP5.07□□□□□ -1.6
VPS53-212ENST00000572259 NANOGP8Q6NSW7 305 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 DHRS4L2Q6PKH6 230 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 HACD2Q6Y1H2 254 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 ZNF836Q6ZNA1 936 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 SSX8Q7RTT4 187 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 OLIG3Q7RTU3 272 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 HMGN2P46Q86SG4 172 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 SPAG16Q8N0X2 631 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 ZNF786Q8N393 782 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 GVQW1Q8N7I0 195 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 C15orf54Q8N8G6 183 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 ACBD4Q8NC06 268 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 OR8J3Q8NGG0 315 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 OR1J1Q8NGS3 322 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 OR10A6Q8NH74 314 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 CNIH3Q8TBE1 160 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 PIGXQ8TBF5 258 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 MYDGFQ969H8 173 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 MAL2Q969L2 176 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 APH1AQ96BI3 265 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 CMTM5Q96DZ9 223 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 ADGRG7Q96K78 797 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms