RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 RTTNQ86VV8 2226 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 OR5B21A6NL26 309 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 PROB1E7EW31 1015 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 NDUFS4O43181 175 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 RAMP3O60896 148 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 PTGER4P35408 488 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 GABRA2P47869 451 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 RPL23AP62750 156 aaKnown RBP9.53□□□□□ -0.88
CLK3-226ENST00000569406 TMEM184AQ6ZMB5 413 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 ADAD2Q8NCV1 583 aaKnown RBP9.53□□□□□ -0.88
CLK3-226ENST00000569406 OR51A2Q8NGJ7 313 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 C11orf40Q8WZ69 217 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 ZG16BQ96DA0 208 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 MS4A6EQ96DS6 147 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 ZFYVE21Q9BQ24 234 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 KCNK15Q9H427 330 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 SIDT1Q9NXL6 827 aaKnown RBP9.53□□□□□ -0.88
CLK3-226ENST00000569406 SS18L2Q9UHA2 77 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 WIPI2Q9Y4P8 454 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 CLEC18AA5D8T8 446 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 CD55P08174 381 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 DANCRP0C864 163 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 COL9A1P20849 921 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 FBLP22087 321 aaKnown RBP9.53□□□□□ -0.88
CLK3-226ENST00000569406 RPL12P30050 165 aaKnown RBP9.53□□□□□ -0.88
CLK3-226ENST00000569406 CDKN1AP38936 164 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 EFNB2P52799 333 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 RND3P61587 244 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 SLC17A1Q14916 467 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 ENTPD8Q5MY95 495 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 LCN10Q6JVE6 187 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 DNM1P34Q6PK57 102 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 MRPL21Q7Z2W9 205 aaKnown RBP9.53□□□□□ -0.88
CLK3-226ENST00000569406 CLEC18CQ8NCF0 446 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 CADM4Q8NFZ8 388 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 OR2AJ1Q8NGZ0 328 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 ZNF775Q96BV0 537 aaPredicted RBP9.53□□□□□ -0.88
CLK3-226ENST00000569406 TRBV24-1A0A075B6N3 115 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 NPIPA5A0A0B4J1W7 369 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 NPIPA5E9PKD4 350 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 NPIPA3F8WFD2 350 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 PDLIM4P50479 330 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 ELOCQ15369 112 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 PGGHGQ32M88 737 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 OR4C11Q6IEV9 310 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 TEX43Q6ZNM6 134 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 MORN4Q8NDC4 146 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 ZNF681Q96N22 645 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 OR7D2Q96RA2 312 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 LPAR4Q99677 370 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 KXD1Q9BQD3 176 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 HCAR1Q9BXC0 346 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 C6orf106Q9H6K1 298 aaPredicted RBP9.52□□□□□ -0.89
CLK3-226ENST00000569406 NPIPA1Q9UND3 350 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 PSG11Q9UQ72 335 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 ZNF780BQ9Y6R6 833 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 RP1P56715 2156 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 A0A1B0GVT2 93 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 C1QTNF3-AMACRE9PGA6 284 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 KNG1P01042 644 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 PPIAL4GP0DN37 164 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 FUT1P19526 365 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 GCH1P30793 250 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 CX3CR1P49238 355 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 MEPCEQ7L2J0 689 aaKnown RBP9.52□□□□□ -0.89
CLK3-226ENST00000569406 FAM220AQ7Z4H9 259 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 OR51D1Q8NGF3 324 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 OR52E1Q8NGJ3 308 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 CD180Q99467 661 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 NMES1Q9C002 83 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 SLC45A2Q9UMX9 530 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 A0A087WUU8 490 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 PIN1P1O15428 100 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 CHRM2P08172 466 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 RAB11AP62491 216 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 SRSF7Q16629 238 aaKnown RBP eCLIP9.52□□□□□ -0.89
CLK3-226ENST00000569406 TMEM196Q5HYL7 178 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 IGF2-ASQ6U949 168 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 RTN4RL2Q86UN3 420 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 COX18Q8N8Q8 333 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 DNASE2BQ8WZ79 361 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 HSPB9Q9BQS6 159 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 FGF22Q9HCT0 170 aa9.52□□□□□ -0.89
CLK3-226ENST00000569406 CLEC3AO75596 197 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 SEMA4FO95754 770 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 DDAH2O95865 285 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 WNT11O96014 354 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 THY1P04216 161 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 SRP19P09132 144 aaKnown RBP9.51□□□□□ -0.89
CLK3-226ENST00000569406 FBXO45P0C2W1 286 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 CNN1P51911 297 aaKnown RBP9.51□□□□□ -0.89
CLK3-226ENST00000569406 FAM3AP98173 230 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 TFF2Q03403 129 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 SLC25A42Q86VD7 318 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 D2HGDHQ8N465 521 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 RFLNBQ8N5W9 214 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 LFNGQ8NES3 379 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 OR2Y1Q8NGV0 311 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 SH3BGRL3Q9H299 93 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 CGGBP1Q9UFW8 167 aaPredicted RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms