RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 SFXN4Q6P4A7 337 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 C16orf47Q6ZP98 133 aaPredicted RBP2.37□□□□□ -2.03
VPS35-209ENST00000568642 CCDC121Q6ZUS5 278 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 C17orf82Q86X59 251 aaPredicted RBP2.37□□□□□ -2.03
VPS35-209ENST00000568642 PRR22Q8IZ63 422 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 STK40Q8N2I9 435 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 C6orf223Q8N319 242 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 EID2Q8N6I1 236 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 NATD1Q8N6N6 113 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 OR2T6Q8NHC8 308 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 PPTC7Q8NI37 304 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 ZNRF4Q8WWF5 429 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 TMEM234Q8WY98 164 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 ARPC1AQ92747 370 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 RAB8BQ92930 207 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 NABP1Q96AH0 204 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 TADA1Q96BN2 335 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 RMND5BQ96G75 393 aaPredicted RBP2.37□□□□□ -2.03
VPS35-209ENST00000568642 RNF185Q96GF1 192 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 TMEM80Q96HE8 168 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 SCGB3A2Q96PL1 93 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 TSNAXQ99598 290 aaKnown RBP2.37□□□□□ -2.03
VPS35-209ENST00000568642 RARRES2Q99969 163 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 C19orf24Q9BVV8 132 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 KLK15Q9H2R5 256 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 MS4A6AQ9H2W1 248 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 TPK1Q9H3S4 243 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 ZBTB20Q9HC78 741 aaPredicted RBP2.37□□□□□ -2.03
VPS35-209ENST00000568642 SPHK2Q9NRA0 654 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 MCUBQ9NWR8 336 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 GIN1Q9NXP7 522 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 TAS2R16Q9NYV7 291 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 ZNF391Q9UJN7 358 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 CES1P1Q9UKY3 287 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 HERC2O95714 4834 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 TRRAPQ9Y4A5 3859 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 MYH6P13533 1939 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 A0A087WWV3 80 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 IGHV2OR16-5A0A0B4J2B6 119 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 A0A0G2JLM5 398 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 ZNF816-ZNF321PA0A0X1KG74 233 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 TMEM150BA6NC51 233 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 RBMY1BA6NDE4 496 aaKnown RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 RBMY1EA6NEQ0 496 aaKnown RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 BTNL10A8MVZ5 291 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 LINC00587B1AMM8 73 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 FAM220BPB1ANY3 271 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 B4DXG7 233 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 ANKRD65E5RJM6 399 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 TAAR5O14804 337 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 FAM189A1O60320 539 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 CRLF1O75462 422 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 MED6O75586 246 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 SLC22A5O76082 557 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 SRP72O76094 671 aaKnown RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 CNIH1O95406 144 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 KLF8O95600 359 aaPredicted RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 IGHG1P01857 330 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 TYMSP04818 313 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 CD55P08174 381 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 RBMY1DP0C7P1 496 aaKnown RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 ESDP10768 282 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 SLC2A2P11168 524 aaPredicted RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 AKR1C4P17516 323 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 SDC1P18827 310 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 ALOX5APP20292 161 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 GDF1P27539 372 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 HTR1DP28221 377 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 IL12AP29459 219 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 CCKARP32238 428 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 HRH1P35367 487 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 CTRLP40313 264 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 RFX2P48378 723 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 RORCP51449 518 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 HERV-K104P61576 105 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 STXBP1P61764 594 aaKnown RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 PPP1CBP62140 327 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 RUNX1Q01196 453 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 ZNF91Q05481 1191 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 FMODQ06828 376 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 ARL16Q0P5N6 197 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 ILF3Q12906 894 aaKnown RBP eCLIP2.36□□□□□ -2.03
VPS35-209ENST00000568642 DLG1Q12959 904 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 EMC2Q15006 297 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 TMED2Q15363 201 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 TGIF1Q15583 401 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 TRAM1Q15629 374 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 LRRC75BQ2VPJ9 315 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 CEACAM16Q2WEN9 425 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 NSUN5P1Q3KNT7 163 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 CEACAM21Q3KPI0 293 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 PDZD11Q5EBL8 140 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 TEX30Q5JUR7 227 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 DDI2Q5TDH0 399 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 HECTD2Q5U5R9 776 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 OR8G2PQ6IF36 304 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 KRTAP5-4Q6L8H1 288 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 UFSP1Q6NVU6 142 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 XKRXQ6PP77 449 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 Q6ZTK2 550 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms