RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 NUDT16L1Q9BRJ7 211 aaKnown RBP16.18■□□□□ 0.18
CLN3-225ENST00000566824 CNTD2Q9H8S5 307 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 ING4Q9UNL4 249 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 GSTK1Q9Y2Q3 226 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 DSCAML1Q8TD84 2053 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 KIR2DS1A0A191URI9 304 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 A0A1W2PP11 408 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 TMEM82A0PJX8 343 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 TNFAIP8O95379 198 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 SRMP19623 302 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 HSD17B12Q53GQ0 312 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 Q8IYB0 196 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 JAGN1Q8N5M9 183 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 PXT1Q8NFP0 134 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 TSPAN14Q8NG11 270 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 OR4D6Q8NGJ1 314 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 FCGR1BQ92637 280 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 C7orf69Q9H7B7 122 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 ZNF696Q9H7X3 374 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 ZNF581Q9P0T4 197 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 SLC25A10Q9UBX3 287 aaPredicted RBP16.17■□□□□ 0.18
CLN3-225ENST00000566824 JMJD1CQ15652 2540 aa16.17■□□□□ 0.18
CLN3-225ENST00000566824 C2CD3Q4AC94 2353 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 SHISA3A0PJX4 238 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 ZNF737O75373 536 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 HAND1O96004 215 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 NDUFB7P17568 137 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 PAX8Q06710 450 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 ZNF146Q15072 292 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 TRAM1Q15629 374 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 LRRC10Q5BKY1 277 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 SYT6Q5T7P8 510 aaPredicted RBP16.16■□□□□ 0.18
CLN3-225ENST00000566824 CD200R1LQ6Q8B3 271 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 METAP1DQ6UB28 335 aaPredicted RBP16.16■□□□□ 0.18
CLN3-225ENST00000566824 THRSPQ92748 146 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 C1orf147Q96MC9 270 aaPredicted RBP16.16■□□□□ 0.18
CLN3-225ENST00000566824 SHARPINQ9H0F6 387 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 TCF7L1Q9HCS4 588 aa16.16■□□□□ 0.18
CLN3-225ENST00000566824 RPUSD1Q9UJJ7 312 aaKnown RBP16.16■□□□□ 0.18
CLN3-225ENST00000566824 CCRL2O00421 344 aa16.15■□□□□ 0.18
CLN3-225ENST00000566824 PSMA1P25786 263 aaKnown RBP16.15■□□□□ 0.18
CLN3-225ENST00000566824 PIGYQ3MUY2 71 aa16.15■□□□□ 0.18
CLN3-225ENST00000566824 Q6P435 159 aa16.15■□□□□ 0.18
CLN3-225ENST00000566824 C17orf107Q6ZR85 190 aa16.15■□□□□ 0.18
CLN3-225ENST00000566824 ZNF561Q8N587 486 aa16.15■□□□□ 0.18
CLN3-225ENST00000566824 LY6G5BQ8NDX9 201 aa16.15■□□□□ 0.18
CLN3-225ENST00000566824 Q8NFD4 153 aa16.15■□□□□ 0.18
CLN3-225ENST00000566824 H1FXQ92522 213 aaKnown RBP16.15■□□□□ 0.18
CLN3-225ENST00000566824 PHYHIPQ92561 330 aa16.15■□□□□ 0.18
CLN3-225ENST00000566824 NR1H4Q96RI1 486 aaPredicted RBP16.15■□□□□ 0.18
CLN3-225ENST00000566824 DCTN5Q9BTE1 182 aa16.15■□□□□ 0.18
CLN3-225ENST00000566824 MRPS28Q9Y2Q9 187 aaKnown RBP16.15■□□□□ 0.18
CLN3-225ENST00000566824 SIRPB1O00241 398 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 PSPNO60542 156 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 HTR3BO95264 441 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 TK1P04183 234 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 CALRP27797 417 aaKnown RBP16.14■□□□□ 0.17
CLN3-225ENST00000566824 CAPZA1P52907 286 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 CAV3P56539 151 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 FGF12P61328 243 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 RSU1Q15404 277 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 CD276Q5ZPR3 534 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 ELP2Q6IA86 826 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 ASCC1Q8N9N2 400 aaKnown RBP16.14■□□□□ 0.17
CLN3-225ENST00000566824 CPNE2Q96FN4 548 aaPredicted RBP16.14■□□□□ 0.17
CLN3-225ENST00000566824 CYYR1Q96J86 154 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 BEX2Q9BXY8 128 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 C19orf12Q9NSK7 152 aa16.14■□□□□ 0.17
CLN3-225ENST00000566824 A0A087WXM4 84 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 TRDV1A0A1B0GX56 115 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 MEX3AA1L020 520 aaKnown RBP16.13■□□□□ 0.17
CLN3-225ENST00000566824 TRIM64CA6NLI5 447 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 J3QLI3 93 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 K7N7A8 449 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 ENSAO43768 121 aaKnown RBP16.13■□□□□ 0.17
CLN3-225ENST00000566824 OR2H2O95918 312 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 CHRM2P08172 466 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 SMIM18P0DKX4 95 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 CD37P11049 281 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 GATA3P23771 443 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 MTNR1BP49286 362 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 SCN1BQ07699 218 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 KLF17Q5JT82 389 aaPredicted RBP16.13■□□□□ 0.17
CLN3-225ENST00000566824 GLIPR1L1Q6UWM5 242 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 OR4S1Q8NGB4 309 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 OR4M1Q8NGD0 313 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 CHST6Q9GZX3 395 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 METTL9Q9H1A3 318 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 OR51E2Q9H255 320 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 KCNK15Q9H427 330 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 SEBOXQ9HB31 216 aaPredicted RBP16.13■□□□□ 0.17
CLN3-225ENST00000566824 IL36GQ9NZH8 169 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 CDC42EP3Q9UKI2 254 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 AK6Q9Y3D8 172 aaKnown RBP16.13■□□□□ 0.17
CLN3-225ENST00000566824 AUP1Q9Y679 476 aa16.13■□□□□ 0.17
CLN3-225ENST00000566824 ECDO95905 644 aaPredicted RBP16.12■□□□□ 0.17
CLN3-225ENST00000566824 FSHBP01225 129 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 SERPINA2P20848 420 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 DLX1P56177 255 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 ARF6P62330 175 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms