RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 FNDC9Q8TBE3 224 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 PP6455Q8WZ26 134 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 MAFIPQ8WZ33 124 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 CMSS1Q9BQ75 279 aaKnown RBP11.54□□□□□ -0.56
VPS4A-204ENST00000566354 GPR87Q9BY21 358 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 METTL9Q9H1A3 318 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 SMCO4Q9NRQ5 59 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 GLRX2Q9NS18 164 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 TUBD1Q9UJT1 453 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 A0A0U1RQV5 110 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 COLCA2A8K830 154 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 E9PLN8 166 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 DEDDO75618 318 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 IFNA21P01568 189 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 FOLR2P14207 255 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 SERPINA2P20848 420 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 FKBP2P26885 142 aaKnown RBP11.54□□□□□ -0.56
VPS4A-204ENST00000566354 CD80P33681 288 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 GUCA1AP43080 201 aaPredicted RBP11.54□□□□□ -0.56
VPS4A-204ENST00000566354 FAM3AP98173 230 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 EXT1Q16394 746 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 OR2A2Q6IF42 318 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 OPN5Q6U736 354 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 GALNTL5Q7Z4T8 443 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 FAM219AQ8IW50 185 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 SULF2Q8IWU5 870 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 SEMA6DQ8NFY4 1073 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 LYPD6BQ8NI32 183 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 SLC25A43Q8WUT9 341 aaPredicted RBP11.54□□□□□ -0.56
VPS4A-204ENST00000566354 LYZL4Q96KX0 146 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 RNF122Q9H9V4 155 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 ZNF701Q9NV72 531 aaPredicted RBP11.54□□□□□ -0.56
VPS4A-204ENST00000566354 MED13Q9UHV7 2174 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 AQP7P3A6NL99 342 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 CIDEAO60543 219 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 DHRS3O75911 302 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 CTSDP07339 412 aaPredicted RBP11.53□□□□□ -0.56
VPS4A-204ENST00000566354 FCGR2AP12318 317 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 FCGR2CP31995 323 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 KCNJ3P48549 501 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 SUCLG1P53597 346 aaKnown RBP11.53□□□□□ -0.56
VPS4A-204ENST00000566354 Q0VFX4 171 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 HMGN3Q15651 99 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 UBE2V2Q15819 145 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 RSPO4Q2I0M5 234 aaPredicted RBP11.53□□□□□ -0.56
VPS4A-204ENST00000566354 DTX1Q86Y01 620 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 PRR18Q8N4B5 295 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 C15orf54Q8N8G6 183 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 OR10G3Q8NGC4 313 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 NPRL2Q8WTW4 380 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 HAS2Q92819 552 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 KIRREL1Q96J84 757 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 DECR2Q9NUI1 292 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 P4HTMQ9NXG6 502 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 HDGFL3Q9Y3E1 203 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 V9GYS6 101 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 FAM157AC9JC47 383 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 TMEM33P57088 247 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 TMEM176BQ3YBM2 270 aaPredicted RBP11.53□□□□□ -0.56
VPS4A-204ENST00000566354 DMRTC1Q5HYR2 192 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 DHRS11Q6UWP2 260 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 UBAC2Q8NBM4 344 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 GJC3Q8NFK1 279 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 OR2M3Q8NG83 312 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 M1APQ8TC57 530 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 ZNF2Q9BSG1 426 aaPredicted RBP11.53□□□□□ -0.56
VPS4A-204ENST00000566354 CHST5Q9GZS9 411 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 PLEKHA2Q9HB19 425 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 FBXL17Q9UF56 701 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 KPTNQ9Y664 436 aa11.53□□□□□ -0.56
VPS4A-204ENST00000566354 EML6Q6ZMW3 1958 aa11.52□□□□□ -0.56
VPS4A-204ENST00000566354 CRYM-AS1A6NIL9 109 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 AGPAT2O15120 278 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 RAMP1O60894 148 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 SLC34A2O95436 690 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 MSR1P21757 451 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 SFTPDP35247 375 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 RAB5BP61020 215 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 SLC35A1P78382 337 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 Q6ZRG5 221 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 CCDC54Q8NEL0 328 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 OR9K2Q8NGE7 335 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 AKR7LQ8NHP1 331 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 C2CD4CQ8TF44 421 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 C10orf35Q96D05 121 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 RASL10BQ96S79 203 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 EGLN1Q9GZT9 426 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 ELL3Q9HB65 397 aaPredicted RBP11.52□□□□□ -0.57
VPS4A-204ENST00000566354 PLEKHJ1Q9NW61 149 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 PLA2G2EQ9NZK7 142 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 SH3BGRL2Q9UJC5 107 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 LHX6Q9UPM6 363 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 TIMM10BQ9Y5J6 103 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 CEP295Q9C0D2 2601 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 C5orf63A6NC05 138 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 C9JQL5 133 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 F5H5K5 113 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 NDUFS8O00217 210 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 UBE2CO00762 179 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 ZNF133P52736 654 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms