RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 C19orf18Q8NEA5 215 aa25.8■■□□□ 1.72
CTCF-203ENST00000566078 NEDD4LQ96PU5 975 aa25.8■■□□□ 1.72
CTCF-203ENST00000566078 SPOCK3Q9BQ16 436 aa25.8■■□□□ 1.72
CTCF-203ENST00000566078 EGLN1Q9GZT9 426 aa25.8■■□□□ 1.72
CTCF-203ENST00000566078 PLEKHJ1Q9NW61 149 aa25.8■■□□□ 1.72
CTCF-203ENST00000566078 KCNK7Q9Y2U2 307 aa25.8■■□□□ 1.72
CTCF-203ENST00000566078 COL12A1Q99715 3063 aa25.79■■□□□ 1.72
CTCF-203ENST00000566078 TNFRSF1AP19438 455 aa25.79■■□□□ 1.72
CTCF-203ENST00000566078 GLRA1P23415 457 aa25.79■■□□□ 1.72
CTCF-203ENST00000566078 CHATP28329 748 aa25.79■■□□□ 1.72
CTCF-203ENST00000566078 DUSP1P28562 367 aa25.79■■□□□ 1.72
CTCF-203ENST00000566078 IKZF1Q13422 519 aa25.79■■□□□ 1.72
CTCF-203ENST00000566078 IL13RA2Q14627 380 aa25.79■■□□□ 1.72
CTCF-203ENST00000566078 MPV17LQ2QL34 196 aa25.79■■□□□ 1.72
CTCF-203ENST00000566078 C6orf201Q7Z4U5 140 aa25.79■■□□□ 1.72
CTCF-203ENST00000566078 WDR13Q9H1Z4 485 aa25.79■■□□□ 1.72
CTCF-203ENST00000566078 SAP30LQ9HAJ7 183 aa25.79■■□□□ 1.72
CTCF-203ENST00000566078 UTP20O75691 2785 aaKnown RBP25.79■■□□□ 1.72
CTCF-203ENST00000566078 PCGF3Q3KNV8 242 aa25.78■■□□□ 1.72
CTCF-203ENST00000566078 ERGIC1Q969X5 290 aa25.78■■□□□ 1.72
CTCF-203ENST00000566078 SEH1LQ96EE3 360 aa25.78■■□□□ 1.72
CTCF-203ENST00000566078 SCPEP1Q9HB40 452 aa25.78■■□□□ 1.72
CTCF-203ENST00000566078 LRRK2Q5S007 2527 aa25.78■■□□□ 1.72
CTCF-203ENST00000566078 LINC00854A0A1B0GVQ3 168 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 MEIS3P1A6NDR6 274 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 J3QKU1 62 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 PDCD6O75340 191 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 GOSR1O95249 250 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 MELTFP08582 738 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 GDNFP39905 211 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 ARL6IP1Q15041 203 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 ATAD3CQ5T2N8 411 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 ZNF57Q68EA5 555 aaPredicted RBP25.77■■□□□ 1.72
CTCF-203ENST00000566078 FIP1L1Q6UN15 594 aaKnown RBP25.77■■□□□ 1.72
CTCF-203ENST00000566078 ACP7Q6ZNF0 438 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 DNM1P46Q6ZS02 220 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 GPX8Q8TED1 209 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 NUDCD2Q8WVJ2 157 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 UBTD1Q9HAC8 227 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP25.77■■□□□ 1.72
CTCF-203ENST00000566078 CBLN4Q9NTU7 201 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 KLK11Q9UBX7 282 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 HSF4Q9ULV5 492 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 ISPDA4D126 451 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 SRRM5B3KS81 715 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 SULT1C2O00338 296 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 LPLP06858 475 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 EGR1P18146 543 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 GNG2P59768 71 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 PNLIPRP3Q17RR3 467 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 AGAP6Q5VW22 663 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 HACD4Q5VWC8 232 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 ST8SIA4Q92187 359 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 PPP1R3CQ9UQK1 317 aa25.77■■□□□ 1.72
CTCF-203ENST00000566078 SPTAN1Q13813 2472 aaKnown RBP25.76■■□□□ 1.71
CTCF-203ENST00000566078 CLEC18AA5D8T8 446 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 ORC5O43913 435 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 CLDN1O95832 211 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 CFHR2P36980 270 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 PPOXP50336 477 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 SMIM21Q3B7S5 101 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 CLEC18BQ6UXF7 455 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 GCSAMQ8N6F7 178 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 BOLLQ8N9W6 283 aaKnown RBP25.76■■□□□ 1.71
CTCF-203ENST00000566078 CLEC18CQ8NCF0 446 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 OR11L1Q8NGX0 322 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 Q8TCH9 128 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 TREM2Q9NZC2 230 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 TBC1D24Q9ULP9 559 aa25.76■■□□□ 1.71
CTCF-203ENST00000566078 RBMX2Q9Y388 322 aaKnown RBP25.76■■□□□ 1.71
CTCF-203ENST00000566078 A1L4Q6 167 aa25.75■■□□□ 1.71
CTCF-203ENST00000566078 FUT3P21217 361 aa25.75■■□□□ 1.71
CTCF-203ENST00000566078 DEFA1P59665 94 aa25.75■■□□□ 1.71
CTCF-203ENST00000566078 DEFA3P59666 94 aa25.75■■□□□ 1.71
CTCF-203ENST00000566078 ARFRP1Q13795 201 aa25.75■■□□□ 1.71
CTCF-203ENST00000566078 SPIN3Q5JUX0 258 aa25.75■■□□□ 1.71
CTCF-203ENST00000566078 TRAPPC6BQ86SZ2 158 aa25.75■■□□□ 1.71
CTCF-203ENST00000566078 VRK1Q99986 396 aaPredicted RBP25.75■■□□□ 1.71
CTCF-203ENST00000566078 SULT4A1Q9BR01 284 aa25.75■■□□□ 1.71
CTCF-203ENST00000566078 RNF7Q9UBF6 113 aa25.75■■□□□ 1.71
CTCF-203ENST00000566078 SERPINE3A8MV23 424 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 H7C417 338 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 DSCAMO60469 2012 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 SOD3P08294 240 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 C11orf71Q6IPW1 123 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 BRICD5Q6PL45 260 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 FAAP24Q9BTP7 215 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 RASL12Q9NYN1 266 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 MTFP1Q9UDX5 166 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 RBBP9O75884 186 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 DANCRP0C864 163 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 ZNF146Q15072 292 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 RGS21Q2M5E4 152 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 TOMM5Q8N4H5 51 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 POC5Q8NA72 575 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 RCC2Q9P258 522 aaKnown RBP25.74■■□□□ 1.71
CTCF-203ENST00000566078 OR14J1Q9UGF5 321 aa25.74■■□□□ 1.71
CTCF-203ENST00000566078 SSX5O60225 188 aa25.73■■□□□ 1.71
CTCF-203ENST00000566078 CD8AP01732 235 aa25.73■■□□□ 1.71
CTCF-203ENST00000566078 DCDC5Q6ZRR9 648 aa25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms