RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 HES5Q5TA89 166 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM166AQ6J272 317 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 SFXN4Q6P4A7 337 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 MZT2AQ6P582 158 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 SLC16A12Q6ZSM3 486 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 LYPD6Q86Y78 171 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 ZNF561Q8N587 486 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 CHST4Q8NCG5 386 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 OR4D6Q8NGJ1 314 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 OR51T1Q8NGJ9 327 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 ACOT12Q8WYK0 555 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 AP3S1Q92572 193 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 KCTD12Q96CX2 325 aaKnown RBP7.73□□□□□ -1.17
LDLR-210ENST00000559340 ZNF488Q96MN9 340 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 WDR13Q9H1Z4 485 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 DCSTAMPQ9H295 470 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 SPACA1Q9HBV2 294 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 BATF3Q9NR55 127 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 RBFOX1Q9NWB1 397 aaKnown RBP7.73□□□□□ -1.17
LDLR-210ENST00000559340 DCAF16Q9NXF7 216 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 ABRACLQ9P1F3 81 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FBLN5Q9UBX5 448 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 OR14J1Q9UGF5 321 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 RSL24D1Q9UHA3 163 aaKnown RBP7.73□□□□□ -1.17
LDLR-210ENST00000559340 RAB22AQ9UL26 194 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 IGHV3OR15-7A0A075B7D8 119 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 IGKV1-12A0A0C4DH73 117 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 SHISA3A0PJX4 238 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 CEACAM18A8MTB9 384 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 FOXH1O75593 365 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 SCGNO76038 276 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 ZNF205O95201 554 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 ECDO95905 644 aaPredicted RBP7.72□□□□□ -1.17
LDLR-210ENST00000559340 HAND1O96004 215 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 IGKV1D-12P01611 117 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 GYPAP02724 150 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 SFTPBP07988 381 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 WNT2P09544 360 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 MGMTP16455 207 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 RAB6AP20340 208 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 RPS19P39019 145 aaKnown RBP7.72□□□□□ -1.17
LDLR-210ENST00000559340 KCNJ3P48549 501 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 GZMKP49863 264 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 OR10A3P58181 314 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 NCS1P62166 190 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 DYNC1I2Q13409 638 aaKnown RBP7.72□□□□□ -1.17
LDLR-210ENST00000559340 P2RY14Q15391 338 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 IDNKQ5T6J7 187 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 CD276Q5ZPR3 534 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 STUMQ69YW2 141 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 CRIP3Q6Q6R5 217 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 ZNF788Q6ZQV5 615 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 RNF144BQ7Z419 303 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 C1QL2Q7Z5L3 287 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 OR51D1Q8NGF3 324 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 OR5T2Q8NGG2 359 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 CLDND2Q8NHS1 167 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 ANGPTL6Q8NI99 470 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 SLC25A28Q96A46 364 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 PTX4Q96A99 478 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 SLC25A46Q96AG3 418 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 PHF21AQ96BD5 680 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 ISOC1Q96CN7 298 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 DGCR14Q96DF8 476 aaKnown RBP7.72□□□□□ -1.17
LDLR-210ENST00000559340 SDSLQ96GA7 329 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 SNX22Q96L94 193 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 GFI1Q99684 422 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 TMEM59Q9BXS4 323 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 SELENOIQ9C0D9 397 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 NAA50Q9GZZ1 169 aaKnown RBP7.72□□□□□ -1.17
LDLR-210ENST00000559340 FAM234AQ9H0X4 552 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 RNF167Q9H6Y7 350 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 DAPK2Q9UIK4 370 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 ST3GAL6Q9Y274 331 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 ETV7Q9Y603 341 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 CEPT1Q9Y6K0 416 aa7.72□□□□□ -1.17
LDLR-210ENST00000559340 ITPR3Q14573 2671 aa7.71□□□□□ -1.17
LDLR-210ENST00000559340 HIVEP1P15822 2718 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 TMEM14DPA8MWL7 114 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 RNF223E7ERA6 249 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.71□□□□□ -1.18
LDLR-210ENST00000559340 TNFRSF13BO14836 293 aaPredicted RBP7.71□□□□□ -1.18
LDLR-210ENST00000559340 SIGLEC5O15389 551 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 TMPRSS2O15393 492 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 MPIG6BO95866 241 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 IGHV2-5P01817 119 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 GLAP06280 429 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 CLEC2LP0C7M8 214 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 VSIG8P0DPA2 414 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 ZNF44P15621 663 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 ZNF182P17025 639 aaPredicted RBP7.71□□□□□ -1.18
LDLR-210ENST00000559340 PITPNBP48739 271 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 RBM11P57052 281 aaKnown RBP7.71□□□□□ -1.18
LDLR-210ENST00000559340 GNB2P62879 340 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 SCN1BQ07699 218 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 HNRNPA0Q13151 305 aaKnown RBP7.71□□□□□ -1.18
LDLR-210ENST00000559340 IKZF1Q13422 519 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 RBM39Q14498 530 aaKnown RBP7.71□□□□□ -1.18
LDLR-210ENST00000559340 ARL6IP1Q15041 203 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 KRTAP1-3Q8IUG1 177 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms