RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 HERV-K104P61576 105 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 SRPXP78539 464 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF92Q03936 586 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 RNPS1Q15287 305 aaKnown RBP6.29□□□□□ -1.4
VPS13C-206ENST00000558338 OR1C1Q15619 314 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 SRSF7Q16629 238 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS13C-206ENST00000558338 FAM74A1Q5RGS3 127 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 CDCP2Q5VXM1 449 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF585AQ6P3V2 769 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 IL34Q6ZMJ4 242 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 COLCA1Q6ZS62 124 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 TMEM200AQ86VY9 491 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 KRTAP1-3Q8IUG1 177 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 SLC38A6Q8IZM9 456 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 FAM185AQ8N0U4 392 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 MAFIPQ8WZ33 124 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 PIGCQ92535 297 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 GALNT14Q96FL9 552 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF845Q96IR2 970 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-206ENST00000558338 FER1L6-AS2Q96M78 137 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 FAAP24Q9BTP7 215 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 ARRDC1-AS1Q9H2J1 176 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 SLC6A15Q9H2J7 730 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 NAA60Q9H7X0 242 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 TMEM100Q9NV29 134 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 TUBD1Q9UJT1 453 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 ST3GAL6Q9Y274 331 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 KMT2EQ8IZD2 1858 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 TRIOO75962 3097 aa6.29□□□□□ -1.4
VPS13C-206ENST00000558338 PIGBOS1A0A0B4J2F0 54 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 PINLYPA6NC86 204 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 H0YIZ8 118 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 GOSR1O95249 250 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 PLATP00750 562 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 HOXB5P09067 269 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 FUT3P21217 361 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 ITGA3P26006 1051 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 CLDN18P56856 261 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 PLGLB1Q02325 96 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 IL15RAQ13261 267 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 RAB32Q13637 225 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 RBM39Q14498 530 aaKnown RBP6.28□□□□□ -1.4
VPS13C-206ENST00000558338 LPAL2Q16609 132 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 IAH1Q2TAA2 248 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-206ENST00000558338 DMRTC1Q5HYR2 192 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 DCAF10Q5QP82 559 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 TSPO2Q5TGU0 170 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 SPINK14Q6IE38 97 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 SLC22A25Q6T423 547 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 UNQ6126/PRO20091Q6UXV3 157 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 TFAP2EQ6VUC0 442 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 Q6ZS49 121 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 MRPL21Q7Z2W9 205 aaKnown RBP6.28□□□□□ -1.4
VPS13C-206ENST00000558338 LINC00596Q86U02 117 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 DTX1Q86Y01 620 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 FBXL14Q8N1E6 418 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 TMEM105Q8N8V8 129 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 LRTM2Q8N967 370 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 SPERTQ8NA61 448 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 KDF1Q8NAX2 398 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-206ENST00000558338 Q8NFD4 153 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 OR10AD1Q8NGE0 317 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 OR51F2Q8NH61 342 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 APOBEC3DQ96AK3 386 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-206ENST00000558338 APH1AQ96BI3 265 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 SAT2Q96F10 170 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-206ENST00000558338 OR10C1Q96KK4 312 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 SULT4A1Q9BR01 284 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 C1QTNF6Q9BXI9 259 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 PRRG4Q9BZD6 226 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 SLC5A7Q9GZV3 580 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 PLEKHA2Q9HB19 425 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 ZC4H2Q9NQZ6 224 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 MMP26Q9NRE1 261 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 ASF1BQ9NVP2 202 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 STARD10Q9Y365 291 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 LOC105371267A0A1B0GV96 52 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 LNP1A1A4G5 178 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 M0R296 226 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 GEMIN2O14893 280 aaKnown RBP6.28□□□□□ -1.4
VPS13C-206ENST00000558338 DEDDO75618 318 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 ACTL6AO96019 429 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 CST4P01036 141 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 GAPDHP04406 335 aaKnown RBP6.28□□□□□ -1.4
VPS13C-206ENST00000558338 SFTPBP07988 381 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 PATE4P0C8F1 98 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 SP9P0CG40 484 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 PIGPP57054 158 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 ARF1P84077 181 aaKnown RBP6.28□□□□□ -1.4
VPS13C-206ENST00000558338 PLP2Q04941 152 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 MPV17LQ2QL34 196 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 TCEAL6Q6IPX3 200 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 MCEMP1Q8IX19 187 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 ZDHHC23Q8IYP9 409 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF611Q8N823 705 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-206ENST00000558338 LHFPL5Q8TAF8 219 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 FGFBP3Q8TAT2 258 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 ADAMTS17Q8TE56 1095 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 TCEAL3Q969E4 200 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms