RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 AVPP01185 164 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 CHRM2P08172 466 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 PSMA1P25786 263 aaKnown RBP9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 PTGFRP43088 359 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 KCTD21Q4G0X4 260 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 CRIP3Q6Q6R5 217 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 UNQ9370/PRO34162Q6UXP9 181 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 C1QL2Q7Z5L3 287 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 PXT1Q8NFP0 134 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 OR10K1Q8NGX5 313 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 FCGR1BQ92637 280 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 MUL1Q969V5 352 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 NR1H4Q96RI1 486 aaPredicted RBP9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 SLITRK2Q9H156 845 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 HMG20AQ9NP66 347 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 RPUSD1Q9UJJ7 312 aaKnown RBP9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 WNK2Q9Y3S1 2297 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 FN1P02751 2386 aaKnown RBP9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 SONP18583 2426 aaKnown RBP9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 MTORP42345 2549 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 VPS13CQ709C8 3753 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 MEGF11A6BM72 1044 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 SIRPB1O00241 398 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 SH2D1BO14796 132 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 TNFAIP8O95379 198 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 CSTBP04080 98 aaKnown RBP9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 LIPFP07098 398 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 FAM157CP0CG43 387 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 PPIAL4GP0DN37 164 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 ZNF44P15621 663 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 HOXB4P17483 251 aaPredicted RBP9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 SERPINA2P20848 420 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 GABRR1P24046 479 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 GABRA5P31644 462 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 MTNR1BP49286 362 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 BMXP51813 675 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 CAV3P56539 151 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 RIPPLY3P57055 190 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 FGF12P61328 243 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 FABP5Q01469 135 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 PAX2Q02962 417 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 PAX8Q06710 450 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 NEDD8Q15843 81 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 SSX1Q16384 188 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 SPIN3Q5JUX0 258 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 UBE2UQ5VVX9 321 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 AWAT2Q6E213 333 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 FAM185AQ8N0U4 392 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 NKAIN3Q8N8D7 197 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 NANPQ8TBE9 248 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 PCGF1Q9BSM1 259 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 DCTN5Q9BTE1 182 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 METTL9Q9H1A3 318 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 CNTD2Q9H8S5 307 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 RHOFQ9HBH0 211 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 EXOSC4Q9NPD3 245 aaKnown RBP9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 ONECUT1Q9UBC0 465 aa9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 MRPS28Q9Y2Q9 187 aaKnown RBP9.48□□□□□ -0.89
CCDC88C-212ENST00000556767 IGHV3OR16-10A0A075B7F0 116 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 CCRL2O00421 344 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 DEGS1O15121 323 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 ARL6IP5O75915 188 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 TK1P04183 234 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 UCHL1P09936 223 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 SRMP19623 302 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 EDDM3BP56851 147 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 ARF6P62330 175 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 EDDM3AQ14507 147 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 C11orf91Q3C1V1 193 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 SLC22A6Q4U2R8 563 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 METTL11BQ5VVY1 283 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 GLT8D1Q68CQ7 371 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 GLIPR1L1Q6UWM5 242 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 TMEM91Q6ZNR0 172 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 C1orf229Q6ZS94 237 aaPredicted RBP9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 GDPD3Q7L5L3 318 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 CMTM4Q8IZR5 234 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 TSPAN14Q8NG11 270 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 OR4M1Q8NGD0 313 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 PPP1R35Q8TAP8 253 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 PHYHIPQ92561 330 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 CHST6Q9GZX3 395 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 FAM234AQ9H0X4 552 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 PPIL3Q9H2H8 161 aaKnown RBP9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 VCX3AQ9NNX9 186 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 NDUFB11Q9NX14 153 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 OPN4Q9UHM6 478 aa9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 SF3B6Q9Y3B4 125 aaKnown RBP9.47□□□□□ -0.89
CCDC88C-212ENST00000556767 A0A087WXM4 84 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 TMEM82A0PJX8 343 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 K7N7A8 449 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 ZNF780AO75290 641 aaPredicted RBP9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 SC5DO75845 299 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 TOX4O94842 621 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 OR2H2O95918 312 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 CALRP27797 417 aaKnown RBP9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 GP2P55259 537 aaKnown RBP9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 RPL31P62899 125 aaKnown RBP9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 ZNF146Q15072 292 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 PDCD1Q15116 288 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 611 ms