RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 CHRM2P08172 466 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 DUSP1P28562 367 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 CAPZA1P52907 286 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 RSU1Q15404 277 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 CD276Q5ZPR3 534 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 ASCL4Q6XD76 172 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 FGFRL1Q8N441 504 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 NKAIN3Q8N8D7 197 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 ZNRF1Q8ND25 227 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 OR10K1Q8NGX5 313 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 RAB40AQ8WXH6 277 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 MUL1Q969V5 352 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 NR1H4Q96RI1 486 aaPredicted RBP13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 METTL9Q9H1A3 318 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 TMEM160Q9NX00 188 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 IL36RNQ9UBH0 155 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 SLC25A10Q9UBX3 287 aaPredicted RBP13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 GLS2Q9UI32 602 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 METRNQ9UJH8 293 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 GSTK1Q9Y2Q3 226 aa13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 FN1P02751 2386 aaKnown RBP13.47□□□□□ -0.25
CHMP1A-209ENST00000550872 TRDV1A0A1B0GX56 115 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 HTR3BO95264 441 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 ECDO95905 644 aaPredicted RBP13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 NDUFB7P17568 137 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 ADRA2CP18825 462 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 GATA3P23771 443 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 CALRP27797 417 aaKnown RBP13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 MTNR1BP49286 362 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 COL10A1Q03692 680 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 GLT8D1Q68CQ7 371 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 BTNL3Q6UXE8 466 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 BTN2A1Q7KYR7 527 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 LRRTM1Q86UE6 522 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 ZNF561Q8N587 486 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 NUDT16L1Q9BRJ7 211 aaKnown RBP13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 C7orf69Q9H7B7 122 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 CNTD2Q9H8S5 307 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 MRPS28Q9Y2Q9 187 aaKnown RBP13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 INSIG2Q9Y5U4 225 aa13.46□□□□□ -0.25
CHMP1A-209ENST00000550872 IGHV2-70DA0A0C4DH43 119 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 KIR2DS1A0A191URI9 304 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 C22orf46C9J442 243 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 J3QLI3 93 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 SH2D1BO14796 132 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 GPR37O15354 613 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 HAND1O96004 215 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 CSTBP04080 98 aaKnown RBP13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 BMXP51813 675 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 FGF12P61328 243 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 PAX2Q02962 417 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 ZNF146Q15072 292 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 C11orf91Q3C1V1 193 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 SPIN3Q5JUX0 258 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 FAM120AOSQ5T036 256 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 ELP2Q6IA86 826 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 CD200R1LQ6Q8B3 271 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 ASCC1Q8N9N2 400 aaKnown RBP13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 H1FXQ92522 213 aaKnown RBP13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 FOXRED1Q96CU9 486 aaPredicted RBP13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 SHARPINQ9H0F6 387 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 SEBOXQ9HB31 216 aaPredicted RBP13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 EXOSC4Q9NPD3 245 aaKnown RBP13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 PCDHB16Q9NRJ7 776 aa13.45□□□□□ -0.26
CHMP1A-209ENST00000550872 ENSAO43768 121 aaKnown RBP13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 HNF1AP20823 631 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 GALP22466 123 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 CAV3P56539 151 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 SCN1BQ07699 218 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 SLC22A6Q4U2R8 563 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 AWAT2Q6E213 333 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 GLIPR1L1Q6UWM5 242 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 LYPD6Q86Y78 171 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 OR4D6Q8NGJ1 314 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 UQCC2Q9BRT2 126 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 BEX2Q9BXY8 128 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 TMPRSS13Q9BYE2 586 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 IL36GQ9NZH8 169 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 STUB1Q9UNE7 303 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 SSR3Q9UNL2 185 aa13.44□□□□□ -0.26
CHMP1A-209ENST00000550872 TRIM64CA6NLI5 447 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 SIRPB1O00241 398 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 ZNF780AO75290 641 aaPredicted RBP13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 TK1P04183 234 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 LIPFP07098 398 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 ZNF44P15621 663 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 CD36P16671 472 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 SERPINA2P20848 420 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 GPR176Q14439 515 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 C22orf42Q6IC83 251 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 IL17RELQ6ZVW7 336 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 Q8NFD4 153 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 DACT3Q96B18 629 aaPredicted RBP13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 SNX22Q96L94 193 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 DCTN5Q9BTE1 182 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 MRI1Q9BV20 369 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 FAM234AQ9H0X4 552 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 LPAR3Q9UBY5 353 aa13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 RPUSD1Q9UJJ7 312 aaKnown RBP13.43□□□□□ -0.26
CHMP1A-209ENST00000550872 CDC42EP3Q9UKI2 254 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms