RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 LHFPL6Q9Y693 200 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 VPS13DQ5THJ4 4388 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 IGHV3OR15-7A0A075B7D8 119 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 TRAV27A0A087WT01 109 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 IGLV1-36A0A0B4J1U3 117 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 A0A0B4J203 849 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 ELOVL7A1L3X0 281 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 A6NDX4 124 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 NKX6-3A6NJ46 265 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 M0R1W7 72 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 DCTN6O00399 190 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 CDC42EP2O14613 210 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 FFAR1O14842 300 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 SLC16A7O60669 478 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 KHDRBS3O75525 346 aaKnown RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 KRT36O76013 467 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 TXNDC12O95881 172 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 CD14P08571 375 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 IFI30P13284 250 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 MUC1P15941 1255 aaPredicted RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 CA6P23280 308 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 PAX6P26367 422 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 HOXD3P31249 432 aaPredicted RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 OTX1P32242 354 aaPredicted RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 RPL4P36578 427 aaKnown RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 MDH1P40925 334 aaKnown RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 RASSF2P50749 326 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 SLC18A1P54219 525 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 VSNL1P62760 191 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 IFFO1Q0D2I5 559 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 RBM39Q14498 530 aaKnown RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 OR8G1Q15617 311 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 OR8B8Q15620 311 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 LY6EQ16553 131 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 PCK2Q16822 640 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 LRRC75BQ2VPJ9 315 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 IGSF11Q5DX21 431 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 TCTEX1D4Q5JR98 221 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 WDR38Q5JTN6 314 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 GGNBP1Q5YKI7 109 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 NCR3LG1Q68D85 454 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 STUMQ69YW2 141 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 GPR139Q6DWJ6 353 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 SIGIRRQ6IA17 410 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 PQLC2Q6ZP29 291 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 TMPRSS11FQ6ZWK6 438 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 PGAP1Q75T13 922 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 TSEN54Q7Z6J9 526 aaKnown RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 WDR86Q86TI4 376 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 OAFQ86UD1 273 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 RNF113BQ8IZP6 322 aaKnown RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 MREGQ8N565 214 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 PRR26Q8N8Z3 221 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 OR51A7Q8NH64 312 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 GATAD1Q8WUU5 269 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 RASSF5Q8WWW0 418 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 ACOT11Q8WXI4 607 aaPredicted RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 C12orf43Q96C57 262 aaKnown RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 PPP1R14BQ96C90 147 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 SEH1LQ96EE3 360 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 URB1-AS1Q96HZ7 61 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 GPX7Q96SL4 187 aaPredicted RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 DDOQ99489 341 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 CGREF1Q99674 301 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 CCDC28BQ9BUN5 200 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 HDHD2Q9H0R4 259 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 DNTTIP1Q9H147 329 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 TLNRD1Q9H1K6 362 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 PPP1R3EQ9H7J1 279 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 METTL8Q9H825 291 aaKnown RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 NMNAT1Q9HAN9 279 aaPredicted RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 RAB18Q9NP72 206 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 PALMDQ9NP74 551 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 INPP5EQ9NRR6 644 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 C1orf123Q9NWV4 160 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 ADA2Q9NZK5 511 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 CCDC167Q9P0B6 97 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 ONECUT1Q9UBC0 465 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 SH3GLB1Q9Y371 365 aa2.82□□□□□ -1.96
LIMA1-206ENST00000550611 NOP16Q9Y3C1 178 aaKnown RBP2.82□□□□□ -1.96
LIMA1-206ENST00000550611 TET2Q6N021 2002 aaPredicted RBP2.81□□□□□ -1.96
LIMA1-206ENST00000550611 MUC4Q99102 2169 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 A0A087WUU8 490 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 hDV102S1A0JD36 115 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 EFCAB9A8MZ26 197 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 XKRYO14609 159 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 CASQ2O14958 399 aaPredicted RBP2.81□□□□□ -1.96
LIMA1-206ENST00000550611 SIGLEC5O15389 551 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 RGS16O15492 202 aaPredicted RBP2.81□□□□□ -1.96
LIMA1-206ENST00000550611 OGG1O15527 345 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 ATP8B1O43520 1251 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 NDUFB3O43676 98 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 RHBDL1O75783 438 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 DUS4LO95620 317 aaKnown RBP2.81□□□□□ -1.96
LIMA1-206ENST00000550611 PAHP00439 452 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 LCATP04180 440 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 S100A6P06703 90 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 SELLP14151 372 aa2.81□□□□□ -1.96
LIMA1-206ENST00000550611 C21orf33P30042 268 aaPredicted RBP2.81□□□□□ -1.96
LIMA1-206ENST00000550611 GGT2P36268 569 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms