RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 LOC100506127A0A0U1RQW1 187 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 A0A0X1KG70 313 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 A8MV72 311 aaPredicted RBP11.45□□□□□ -0.58
PTCH1-213ENST00000546820 DEGS1O15121 323 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 HAND1O96004 215 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 LIPFP07098 398 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 CALCBP10092 127 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 CD37P11049 281 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 GTF2F2P13984 249 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 AMY2BP19961 511 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 RAB3BP20337 219 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 GADD45AP24522 165 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 ZFP36P26651 326 aaKnown RBP11.45□□□□□ -0.58
PTCH1-213ENST00000546820 HTR2CP28335 458 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 CAV3P56539 151 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 SEC61A1P61619 476 aaKnown RBP11.45□□□□□ -0.58
PTCH1-213ENST00000546820 SLC22A6Q4U2R8 563 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 BTNL3Q6UXE8 466 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 TPRA1Q86W33 373 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 LYPD6Q86Y78 171 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 CD177Q8N6Q3 437 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 FAM216BQ8N7L0 139 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 TMEM185AQ8NFB2 350 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 OR4M2Q8NGB6 313 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 OR5D13Q8NGL4 314 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 OR6M1Q8NGM8 313 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 PPP1R35Q8TAP8 253 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 ST8SIA4Q92187 359 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 GAFA1Q96PS6 74 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 FAM234AQ9H0X4 552 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 GSX1Q9H4S2 264 aaPredicted RBP11.45□□□□□ -0.58
PTCH1-213ENST00000546820 CTSZQ9UBR2 303 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 SLC25A10Q9UBX3 287 aaPredicted RBP11.45□□□□□ -0.58
PTCH1-213ENST00000546820 ZNF222Q9UK12 451 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 DOCK11Q5JSL3 2073 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 ACANP16112 2415 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 H3BUI4 141 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 AIREO43918 545 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 SMIM18P0DKX4 95 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 ZNF16P17020 682 aaPredicted RBP11.44□□□□□ -0.58
PTCH1-213ENST00000546820 NDUFB7P17568 137 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 SERPINA2P20848 420 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 DUSP1P28562 367 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 SNU13P55769 128 aaKnown RBP11.44□□□□□ -0.58
PTCH1-213ENST00000546820 COL10A1Q03692 680 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 SCN1BQ07699 218 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 DGUOKQ16854 277 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 DCAF12L2Q5VW00 463 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 FAHD2BQ6P2I3 314 aaPredicted RBP11.44□□□□□ -0.58
PTCH1-213ENST00000546820 BTN2A1Q7KYR7 527 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 LINC00596Q86U02 117 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 ASCC1Q8N9N2 400 aaKnown RBP11.44□□□□□ -0.58
PTCH1-213ENST00000546820 CHST4Q8NCG5 386 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 ZNRF1Q8ND25 227 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 OR4D6Q8NGJ1 314 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 OR51T1Q8NGJ9 327 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 OR10K1Q8NGX5 313 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 RAB40AQ8WXH6 277 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 YIPF6Q96EC8 236 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 FAHD2AQ96GK7 314 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 SNX22Q96L94 193 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 NKX3-1Q99801 234 aaPredicted RBP11.44□□□□□ -0.58
PTCH1-213ENST00000546820 CST11Q9H112 138 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 ST3GAL6Q9Y274 331 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 MAB21L2Q9Y586 359 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 ABCA1O95477 2261 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 VPS13CQ709C8 3753 aa11.44□□□□□ -0.58
PTCH1-213ENST00000546820 KIR2DS1A0A191URI9 304 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 KIAA1324LA8MWY0 1029 aaPredicted RBP11.43□□□□□ -0.58
PTCH1-213ENST00000546820 J3QLI3 93 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 K7N7A8 449 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 SLC17A2O00624 439 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 SLC22A1O15245 554 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 ENSAO43768 121 aaKnown RBP11.43□□□□□ -0.58
PTCH1-213ENST00000546820 TK1P04183 234 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 ZNF44P15621 663 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 GABRR1P24046 479 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 CEBPDP49716 269 aaPredicted RBP11.43□□□□□ -0.58
PTCH1-213ENST00000546820 KRTAP1-1Q07627 177 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 IL13RA2Q14627 380 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 RAB11BQ15907 218 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 NHLRC3Q5JS37 347 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 TEX29Q8N6K0 151 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 OR13F1Q8NGS4 319 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 KCNG3Q8TAE7 436 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 H1FXQ92522 213 aaKnown RBP11.43□□□□□ -0.58
PTCH1-213ENST00000546820 POM121Q96HA1 1249 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 DMRTB1Q96MA1 342 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 NUDT16L1Q9BRJ7 211 aaKnown RBP11.43□□□□□ -0.58
PTCH1-213ENST00000546820 SCOCQ9UIL1 159 aa11.43□□□□□ -0.58
PTCH1-213ENST00000546820 F8P00451 2351 aa11.42□□□□□ -0.58
PTCH1-213ENST00000546820 IGHV2-70DA0A0C4DH43 119 aa11.42□□□□□ -0.58
PTCH1-213ENST00000546820 FUOMA2VDF0 154 aa11.42□□□□□ -0.58
PTCH1-213ENST00000546820 CRTAPO75718 401 aaPredicted RBP11.42□□□□□ -0.58
PTCH1-213ENST00000546820 BPNT1O95861 308 aa11.42□□□□□ -0.58
PTCH1-213ENST00000546820 OR2H2O95918 312 aa11.42□□□□□ -0.58
PTCH1-213ENST00000546820 TFF1P04155 84 aa11.42□□□□□ -0.58
PTCH1-213ENST00000546820 ARSBP15848 533 aa11.42□□□□□ -0.58
PTCH1-213ENST00000546820 HNF1AP20823 631 aa11.42□□□□□ -0.58
PTCH1-213ENST00000546820 LMO1P25800 156 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms