RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 FAM58AQ8N1B3 248 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 OR5D14Q8NGL3 314 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 OR5D13Q8NGL4 314 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 NRG4Q8WWG1 115 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 TMEM80Q96HE8 168 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 SPACA5Q96QH8 159 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 COMMD4Q9H0A8 199 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 HMG20AQ9NP66 347 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 BABAM2Q9NXR7 383 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 PSORS1C1Q9UIG5 152 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 XPNPEP2O43895 674 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 PSPNO60542 156 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 HAND1O96004 215 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 IER3P46695 156 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 POU3F4P49335 361 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 SLC34A1Q06495 639 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 ACSM1Q08AH1 577 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 ST3GAL4Q11206 333 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 KISS1Q15726 138 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 TMPRSS11AQ6ZMR5 421 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 FAM185AQ8N0U4 392 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 OR8H2Q8N162 312 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 PNKDQ8N490 385 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 ZSCAN4Q8NAM6 433 aaPredicted RBP11.59□□□□□ -0.55
USP28-209ENST00000540925 OR4M1Q8NGD0 313 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 OR52N4Q8NGI2 321 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 TBC1D15Q8TC07 691 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 SSMEM1Q8WWF3 244 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 EMG1Q92979 244 aaKnown RBP11.59□□□□□ -0.55
USP28-209ENST00000540925 ZDHHC16Q969W1 377 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 RFT1Q96AA3 541 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 SMIM19Q96E16 107 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 SNX22Q96L94 193 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 CHIAQ9BZP6 476 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 RHOFQ9HBH0 211 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 ZNRD1Q9P1U0 126 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 DHDHQ9UQ10 334 aa11.59□□□□□ -0.55
USP28-209ENST00000540925 TRBV5-5A0A0J9YX44 114 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 EFCAB10A6NFE3 127 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 C17orf98A8MV24 154 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 H0YJX3 145 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 ANGPTL7O43827 346 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 INMTO95050 263 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 IGHV4-59P01825 116 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 RBP4P02753 201 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 CCL3L1P16619 93 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 MYL12AP19105 171 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 LMO1P25800 156 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 SAA4P35542 130 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 RPS11P62280 158 aaKnown RBP eCLIP11.58□□□□□ -0.56
USP28-209ENST00000540925 BLMHQ13867 455 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 ASCC1Q8N9N2 400 aaKnown RBP11.58□□□□□ -0.56
USP28-209ENST00000540925 Q8NFD4 153 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 OR51A2Q8NGJ7 313 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 GPR148Q8TDV2 347 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 TSEN15Q8WW01 171 aaKnown RBP11.58□□□□□ -0.56
USP28-209ENST00000540925 TAF15Q92804 592 aaKnown RBP eCLIP11.58□□□□□ -0.56
USP28-209ENST00000540925 PGLYRP3Q96LB9 341 aa11.58□□□□□ -0.56
USP28-209ENST00000540925 PKD1L1Q8TDX9 2849 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 FAM181BA6NEQ2 426 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 CYB5AP00167 134 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 PRKACAP17612 351 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 DUSP1P28562 367 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 C21orf33P30042 268 aaPredicted RBP11.57□□□□□ -0.56
USP28-209ENST00000540925 OR3A1P47881 315 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 ERVFRD-1P60508 538 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 RPL15P61313 204 aaKnown RBP11.57□□□□□ -0.56
USP28-209ENST00000540925 RELBQ01201 579 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 MEF2CQ06413 473 aaPredicted RBP11.57□□□□□ -0.56
USP28-209ENST00000540925 FOXL1Q12952 345 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 MIDNQ504T8 468 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 ELP2Q6IA86 826 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 Q6P435 159 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 ASCL4Q6XD76 172 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 OR5D18Q8NGL1 313 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 C17orf50Q8WW18 174 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 TAS2R4Q9NYW5 299 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 ZNF281Q9Y2X9 895 aa11.57□□□□□ -0.56
USP28-209ENST00000540925 A0A1W2PPH5 198 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 GPX5O75715 221 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 ALDOBP05062 364 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 FBP1P09467 338 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 CALCBP10092 127 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 IGFBP3P17936 291 aaPredicted RBP11.56□□□□□ -0.56
USP28-209ENST00000540925 EEF1B2P24534 225 aaKnown RBP11.56□□□□□ -0.56
USP28-209ENST00000540925 ERP29P30040 261 aaKnown RBP11.56□□□□□ -0.56
USP28-209ENST00000540925 SOX2P48431 317 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 TAF9Q16594 264 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 RNLSQ5VYX0 342 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 FIP1L1Q6UN15 594 aaKnown RBP11.56□□□□□ -0.56
USP28-209ENST00000540925 PXT1Q8NFP0 134 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 OR4S1Q8NGB4 309 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 GHSRQ92847 366 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 TMEM106AQ96A25 262 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 VCXQ9H320 206 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 NEK6Q9HC98 313 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 SF3B6Q9Y3B4 125 aaKnown RBP11.56□□□□□ -0.56
USP28-209ENST00000540925 MMP24Q9Y5R2 645 aa11.56□□□□□ -0.56
USP28-209ENST00000540925 A0A1W2PRD5 423 aa11.55□□□□□ -0.56
USP28-209ENST00000540925 A0A1W2PRF3 423 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms