RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 C4orf36Q96KX1 117 aa12.54□□□□□ -0.4
CPSF1-211ENST00000533492 ZNF714Q96N38 554 aa12.54□□□□□ -0.4
CPSF1-211ENST00000533492 OPALINQ96PE5 141 aa12.54□□□□□ -0.4
CPSF1-211ENST00000533492 MBOAT4Q96T53 435 aa12.54□□□□□ -0.4
CPSF1-211ENST00000533492 CHST6Q9GZX3 395 aa12.54□□□□□ -0.4
CPSF1-211ENST00000533492 MMP27Q9H306 513 aa12.54□□□□□ -0.4
CPSF1-211ENST00000533492 SEBOXQ9HB31 216 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-211ENST00000533492 RBFOX1Q9NWB1 397 aaKnown RBP12.54□□□□□ -0.4
CPSF1-211ENST00000533492 FBLN5Q9UBX5 448 aa12.54□□□□□ -0.4
CPSF1-211ENST00000533492 WNK1Q9H4A3 2382 aa12.54□□□□□ -0.4
CPSF1-211ENST00000533492 TRBV2A0A0J9YWF9 115 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 KCNAB3O43448 404 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 FADS2O95864 444 aaKnown RBP12.53□□□□□ -0.4
CPSF1-211ENST00000533492 RBP4P02753 201 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 CALCBP10092 127 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 SNU13P55769 128 aaKnown RBP12.53□□□□□ -0.4
CPSF1-211ENST00000533492 DLX6P56179 175 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 DEFA6Q01524 100 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 ZNF91Q05481 1191 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 PDZK1IP1Q13113 114 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 DYNC1I2Q13409 638 aaKnown RBP12.53□□□□□ -0.4
CPSF1-211ENST00000533492 ALKBH1Q13686 389 aaKnown RBP12.53□□□□□ -0.4
CPSF1-211ENST00000533492 GALEQ14376 348 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 ZBTB49Q6ZSB9 765 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 LHFPL4Q7Z7J7 247 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 RFT1Q96AA3 541 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 PELI1Q96FA3 418 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 ALG8Q9BVK2 526 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 ABCB10Q9NRK6 738 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 IL36RNQ9UBH0 155 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 TBL2Q9Y4P3 447 aaKnown RBP12.53□□□□□ -0.4
CPSF1-211ENST00000533492 MEGF8Q7Z7M0 2845 aa12.53□□□□□ -0.4
CPSF1-211ENST00000533492 FAM90A8PA6NJQ4 464 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 E9PQ18 207 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 SH2D1BO14796 132 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 IGHA1P01876 353 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 RPSAP08865 295 aaKnown RBP12.52□□□□□ -0.41
CPSF1-211ENST00000533492 IGHV1-8P0DP01 117 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 DBTP11182 482 aaKnown RBP12.52□□□□□ -0.41
CPSF1-211ENST00000533492 KIR2DS4P43632 304 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 ZNF146Q15072 292 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 FAM189A2Q15884 450 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 PLA1AQ53H76 456 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 SPIN3Q5JUX0 258 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 LIAT1Q6ZQX7 453 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 TPRX1Q8N7U7 411 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 OR52N4Q8NGI2 321 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 OR51A4Q8NGJ6 313 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 OR13C9Q8NGT0 318 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 OR10AC1Q8NH08 325 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 OR2T6Q8NHC8 308 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 FOXRED1Q96CU9 486 aaPredicted RBP12.52□□□□□ -0.41
CPSF1-211ENST00000533492 MALSU1Q96EH3 234 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 NPFFR1Q9GZQ6 430 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 S100A14Q9HCY8 104 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 AMBNQ9NP70 447 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 GSTK1Q9Y2Q3 226 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 PCDHGB5Q9Y5G0 923 aa12.52□□□□□ -0.41
CPSF1-211ENST00000533492 DSCAML1Q8TD84 2053 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 LOC100130705A0A1B0GUX0 176 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 OR4C45A6NMZ5 311 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 SIRPB1O00241 398 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 EBAG9O00559 213 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 MGST3O14880 152 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 GABRB1P18505 474 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 SSX2Q16385 188 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 ZNF626Q68DY1 528 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 C11orf88Q6PI97 169 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 Q6ZTK2 550 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 TRAPPC6BQ86SZ2 158 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 SYS1Q8N2H4 156 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 OR4S1Q8NGB4 309 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 OR11H6Q8NGC7 330 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 OR5D18Q8NGL1 313 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 RHOXF1Q8NHV9 184 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 PIFOQ8TCI5 191 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 SPACA5Q96QH8 159 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 NKX3-1Q99801 234 aaPredicted RBP12.51□□□□□ -0.41
CPSF1-211ENST00000533492 SLC29A1Q99808 456 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 ZCCHC4Q9H5U6 513 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 RANBP3Q9H6Z4 567 aaPredicted RBP12.51□□□□□ -0.41
CPSF1-211ENST00000533492 HMG20AQ9NP66 347 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 EXOSC4Q9NPD3 245 aaKnown RBP12.51□□□□□ -0.41
CPSF1-211ENST00000533492 INPP5EQ9NRR6 644 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 MYRFQ9Y2G1 1151 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 SIGLEC9Q9Y336 463 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 LINC00312Q9Y6C7 94 aa12.51□□□□□ -0.41
CPSF1-211ENST00000533492 FUOMA2VDF0 154 aa12.5□□□□□ -0.41
CPSF1-211ENST00000533492 VGLL3A8MV65 326 aa12.5□□□□□ -0.41
CPSF1-211ENST00000533492 ODF3BA8MYP8 253 aa12.5□□□□□ -0.41
CPSF1-211ENST00000533492 PSPNO60542 156 aa12.5□□□□□ -0.41
CPSF1-211ENST00000533492 BAG2O95816 211 aa12.5□□□□□ -0.41
CPSF1-211ENST00000533492 MT-ND2P03891 347 aa12.5□□□□□ -0.41
CPSF1-211ENST00000533492 HCKP08631 526 aa12.5□□□□□ -0.41
CPSF1-211ENST00000533492 RAB13P51153 203 aa12.5□□□□□ -0.41
CPSF1-211ENST00000533492 GBX2P52951 348 aaPredicted RBP12.5□□□□□ -0.41
CPSF1-211ENST00000533492 SCN1BQ07699 218 aa12.5□□□□□ -0.41
CPSF1-211ENST00000533492 RAB40BQ12829 278 aa12.5□□□□□ -0.41
CPSF1-211ENST00000533492 MRPL28Q13084 256 aaKnown RBP12.5□□□□□ -0.41
CPSF1-211ENST00000533492 HERPUD1Q15011 391 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms