RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 SPIN3Q5JUX0 258 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 FAM166AQ6J272 317 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 SLC36A1Q7Z2H8 476 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 CD177Q8N6Q3 437 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 OR5D18Q8NGL1 313 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 TMEM186Q96B77 213 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 MED30Q96HR3 178 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 CCL13Q99616 98 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 UQCC2Q9BRT2 126 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 MRI1Q9BV20 369 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 SSBP3Q9BWW4 388 aaPredicted RBP12.02□□□□□ -0.49
CPSF1-206ENST00000531480 OR51E2Q9H255 320 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 DCSTAMPQ9H295 470 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 SMURF1Q9HCE7 757 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 TCF7L1Q9HCS4 588 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 HMG20AQ9NP66 347 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 SNTG1Q9NSN8 517 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 RBFOX1Q9NWB1 397 aaKnown RBP12.02□□□□□ -0.49
CPSF1-206ENST00000531480 TXNL4BQ9NX01 149 aaKnown RBP12.02□□□□□ -0.49
CPSF1-206ENST00000531480 MAB21L2Q9Y586 359 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 A3GALT2U3KPV4 340 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 FN1P02751 2386 aaKnown RBP12.01□□□□□ -0.49
CPSF1-206ENST00000531480 MXRA5Q9NR99 2828 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 TRAV1-2A0A0B4J238 106 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 A0A1B0GW55 424 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 RFPL4AA6NLU0 287 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 RFPL4AL1F8VTS6 287 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 GPR37O15354 613 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 TMPRSS2O15393 492 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 ANGPTL7O43827 346 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 PLATP00750 562 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 MAS1P04201 325 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 DUX4L2P0CJ85 424 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 DUX4L3P0CJ86 424 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 DUX4L4P0CJ87 422 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 DUX4L5P0CJ88 424 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 DUX4L6P0CJ89 424 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 DUX4L7P0CJ90 424 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 GATA3P23771 443 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 MTNR1BP49286 362 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 BMXP51813 675 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 CAPZA1P52907 286 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 CAV3P56539 151 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 IL13RA1P78552 427 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 NHLRC3Q5JS37 347 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 DUX4L9Q6RFH8 374 aaPredicted RBP12.01□□□□□ -0.49
CPSF1-206ENST00000531480 SLC16A12Q6ZSM3 486 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 FAM58AQ8N1B3 248 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 FAM216BQ8N7L0 139 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 OR5T2Q8NGG2 359 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 OR51T1Q8NGJ9 327 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 DMRTB1Q96MA1 342 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 C1orf147Q96MC9 270 aaPredicted RBP12.01□□□□□ -0.49
CPSF1-206ENST00000531480 TSC22D3Q99576 134 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 DUX4Q9UBX2 424 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 CLN8Q9UBY8 286 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 ANK3Q12955 4377 aaKnown RBP12.01□□□□□ -0.49
CPSF1-206ENST00000531480 DSCAML1Q8TD84 2053 aa12.01□□□□□ -0.49
CPSF1-206ENST00000531480 A8MV72 311 aaPredicted RBP12□□□□□ -0.49
CPSF1-206ENST00000531480 DVL1O14640 695 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 PHF1O43189 567 aaPredicted RBP12□□□□□ -0.49
CPSF1-206ENST00000531480 ZNF737O75373 536 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 TMEM225BP0DP42 221 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 CFPP27918 469 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 PRDX2P32119 198 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 S100A5P33763 92 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 OR3A4PP47883 348 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 GMFBP60983 142 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 FGF12P61328 243 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 VBP1P61758 197 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 LSM3P62310 102 aaKnown RBP12□□□□□ -0.49
CPSF1-206ENST00000531480 GNB2P62879 340 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 C1orf100Q5SVJ3 147 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 MZT2AQ6P582 158 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 GLCCI1Q86VQ1 547 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 ZNF561Q8N587 486 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 PNLDC1Q8NA58 520 aaKnown RBP12□□□□□ -0.49
CPSF1-206ENST00000531480 TNFAIP8L1Q8WVP5 186 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 FOXRED1Q96CU9 486 aaPredicted RBP12□□□□□ -0.49
CPSF1-206ENST00000531480 GPER1Q99527 375 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 GFI1Q99684 422 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 CNTD2Q9H8S5 307 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 HIF1ANQ9NWT6 349 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 CCDC59Q9P031 241 aaKnown RBP12□□□□□ -0.49
CPSF1-206ENST00000531480 IL36RNQ9UBH0 155 aa12□□□□□ -0.49
CPSF1-206ENST00000531480 SHISA3A0PJX4 238 aa11.99□□□□□ -0.49
CPSF1-206ENST00000531480 NKX6-3A6NJ46 265 aa11.99□□□□□ -0.49
CPSF1-206ENST00000531480 C22orf46C9J442 243 aa11.99□□□□□ -0.49
CPSF1-206ENST00000531480 J3QLI3 93 aa11.99□□□□□ -0.49
CPSF1-206ENST00000531480 ZNF780AO75290 641 aaPredicted RBP11.99□□□□□ -0.49
CPSF1-206ENST00000531480 ECDO95905 644 aaPredicted RBP11.99□□□□□ -0.49
CPSF1-206ENST00000531480 TFF1P04155 84 aa11.99□□□□□ -0.49
CPSF1-206ENST00000531480 LMO1P25800 156 aa11.99□□□□□ -0.49
CPSF1-206ENST00000531480 LCN2P80188 198 aa11.99□□□□□ -0.49
CPSF1-206ENST00000531480 C22orf42Q6IC83 251 aa11.99□□□□□ -0.49
CPSF1-206ENST00000531480 BATF2Q8N1L9 274 aa11.99□□□□□ -0.49
CPSF1-206ENST00000531480 LY6G5BQ8NDX9 201 aa11.99□□□□□ -0.49
CPSF1-206ENST00000531480 OR4D6Q8NGJ1 314 aa11.99□□□□□ -0.49
CPSF1-206ENST00000531480 C8orf46Q8TAG6 207 aa11.99□□□□□ -0.49
CPSF1-206ENST00000531480 TBC1D15Q8TC07 691 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms