RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 GLCCI1Q86VQ1 547 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 TPRA1Q86W33 373 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 CD177Q8N6Q3 437 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 FAM216BQ8N7L0 139 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 OR4D6Q8NGJ1 314 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 OR6M1Q8NGM8 313 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 TMEM186Q96B77 213 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 MRPS24Q96EL2 167 aaKnown RBP17.25■□□□□ 0.35
CD44-222ENST00000526025 DMRTB1Q96MA1 342 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 C1orf147Q96MC9 270 aaPredicted RBP17.25■□□□□ 0.35
CD44-222ENST00000526025 OR51E2Q9H255 320 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 EXOSC4Q9NPD3 245 aaKnown RBP17.25■□□□□ 0.35
CD44-222ENST00000526025 ING4Q9UNL4 249 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 MAB21L2Q9Y586 359 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 MTORP42345 2549 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 NSD1Q96L73 2696 aaPredicted RBP17.24■□□□□ 0.35
CD44-222ENST00000526025 SLC17A2O00624 439 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 DVL1O14640 695 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 SLC22A1O15245 554 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 CDRT1O95170 752 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 TGFAP01135 160 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 ZFP36P26651 326 aaKnown RBP17.24■□□□□ 0.35
CD44-222ENST00000526025 ALDH3B2P48448 385 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 IL13RA2Q14627 380 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 AWAT2Q6E213 333 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 GLIPR1L1Q6UWM5 242 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 BATF2Q8N1L9 274 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 DACT3Q96B18 629 aaPredicted RBP17.24■□□□□ 0.35
CD44-222ENST00000526025 KCTD7Q96MP8 289 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 GFI1Q99684 422 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 SMR3AQ99954 134 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 CHCHD6Q9BRQ6 235 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 ELL3Q9HB65 397 aaPredicted RBP17.24■□□□□ 0.35
CD44-222ENST00000526025 TMEM160Q9NX00 188 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 OR5V1Q9UGF6 321 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 V9GY05 133 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 TEP1Q99973 2627 aaKnown RBP17.24■□□□□ 0.35
CD44-222ENST00000526025 DSCAML1Q8TD84 2053 aa17.24■□□□□ 0.35
CD44-222ENST00000526025 HAND1O96004 215 aa17.23■□□□□ 0.35
CD44-222ENST00000526025 CSTBP04080 98 aaKnown RBP17.23■□□□□ 0.35
CD44-222ENST00000526025 TFAP2AP05549 437 aa17.23■□□□□ 0.35
CD44-222ENST00000526025 LMO1P25800 156 aa17.23■□□□□ 0.35
CD44-222ENST00000526025 HTR2CP28335 458 aa17.23■□□□□ 0.35
CD44-222ENST00000526025 PAX2Q02962 417 aa17.23■□□□□ 0.35
CD44-222ENST00000526025 LINC00596Q86U02 117 aa17.23■□□□□ 0.35
CD44-222ENST00000526025 CHST4Q8NCG5 386 aa17.23■□□□□ 0.35
CD44-222ENST00000526025 POM121Q96HA1 1249 aa17.23■□□□□ 0.35
CD44-222ENST00000526025 NKX3-1Q99801 234 aaPredicted RBP17.23■□□□□ 0.35
CD44-222ENST00000526025 SLC25A10Q9UBX3 287 aaPredicted RBP17.23■□□□□ 0.35
CD44-222ENST00000526025 OR14J1Q9UGF5 321 aa17.23■□□□□ 0.35
CD44-222ENST00000526025 AK6Q9Y3D8 172 aaKnown RBP17.23■□□□□ 0.35
CD44-222ENST00000526025 A0A1B0GW55 424 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 SHISA3A0PJX4 238 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 SH2D1BO14796 132 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 PHF1O43189 567 aaPredicted RBP17.22■□□□□ 0.35
CD44-222ENST00000526025 ZNF737O75373 536 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 FCN3O75636 299 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 HTR3BO95264 441 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 BPNT1O95861 308 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 DUX4L2P0CJ85 424 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 DUX4L3P0CJ86 424 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 DUX4L4P0CJ87 422 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 DUX4L5P0CJ88 424 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 DUX4L6P0CJ89 424 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 DUX4L7P0CJ90 424 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 GTF2F2P13984 249 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 RAB3BP20337 219 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 CAPZA1P52907 286 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 LCN2P80188 198 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 DUX4L9Q6RFH8 374 aaPredicted RBP17.22■□□□□ 0.35
CD44-222ENST00000526025 OSR2Q8N2R0 312 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 CST11Q9H112 138 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 IFT22Q9H7X7 185 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 IL36RNQ9UBH0 155 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 DUX4Q9UBX2 424 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 KCNS2Q9ULS6 477 aa17.22■□□□□ 0.35
CD44-222ENST00000526025 LOC105371242A0A075B767 164 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 A0A0G2JMP0 313 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 A0A0X1KG70 313 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 J3QLI3 93 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 K7N7A8 449 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 AIREO43918 545 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 SERPINA2P20848 420 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 RBM11P57052 281 aaKnown RBP17.21■□□□□ 0.35
CD44-222ENST00000526025 COL10A1Q03692 680 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 IKZF1Q13422 519 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 SLC22A6Q4U2R8 563 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 ZNRF1Q8ND25 227 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 OR4M2Q8NGB6 313 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 OR10K1Q8NGX5 313 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 C8orf46Q8TAG6 207 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 RAB40AQ8WXH6 277 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 SLC25A28Q96A46 364 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 SNX22Q96L94 193 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 PLGRKTQ9HBL7 147 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 LPAR2Q9HBW0 351 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 HIF1ANQ9NWT6 349 aa17.21■□□□□ 0.35
CD44-222ENST00000526025 SONP18583 2426 aaKnown RBP17.21■□□□□ 0.35
CD44-222ENST00000526025 TRBV23-1A0A0A0MS06 115 aa17.2■□□□□ 0.34
CD44-222ENST00000526025 IGHV2-70DA0A0C4DH43 119 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms