RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 ANGPTL6Q8NI99 470 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 MRPS24Q96EL2 167 aaKnown RBP13.6□□□□□ -0.23
LSM1-204ENST00000522515 TMEM59Q9BXS4 323 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 SELENOIQ9C0D9 397 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 NARFLQ9H6Q4 476 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 CCDC59Q9P031 241 aaKnown RBP13.6□□□□□ -0.23
LSM1-204ENST00000522515 FBLN5Q9UBX5 448 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 TNFRSF13BO14836 293 aaPredicted RBP13.59□□□□□ -0.23
LSM1-204ENST00000522515 NR4A2P43354 598 aa13.59□□□□□ -0.23
LSM1-204ENST00000522515 CAPZA1P52907 286 aa13.59□□□□□ -0.23
LSM1-204ENST00000522515 ART1P52961 327 aa13.59□□□□□ -0.23
LSM1-204ENST00000522515 RPS27AP62979 156 aaKnown RBP13.59□□□□□ -0.23
LSM1-204ENST00000522515 NHLRC3Q5JS37 347 aa13.59□□□□□ -0.23
LSM1-204ENST00000522515 SPIN3Q5JUX0 258 aa13.59□□□□□ -0.23
LSM1-204ENST00000522515 FIP1L1Q6UN15 594 aaKnown RBP13.59□□□□□ -0.23
LSM1-204ENST00000522515 LYPD2Q6UXB3 125 aa13.59□□□□□ -0.23
LSM1-204ENST00000522515 CD177Q8N6Q3 437 aa13.59□□□□□ -0.23
LSM1-204ENST00000522515 KCTD12Q96CX2 325 aaKnown RBP13.59□□□□□ -0.23
LSM1-204ENST00000522515 GAL3ST1Q99999 423 aa13.59□□□□□ -0.23
LSM1-204ENST00000522515 MRI1Q9BV20 369 aa13.59□□□□□ -0.23
LSM1-204ENST00000522515 SLIRPQ9GZT3 109 aaKnown RBP13.59□□□□□ -0.23
LSM1-204ENST00000522515 ZNF222Q9UK12 451 aa13.59□□□□□ -0.23
LSM1-204ENST00000522515 VPS13CQ709C8 3753 aa13.59□□□□□ -0.23
LSM1-204ENST00000522515 GEMIN2O14893 280 aaKnown RBP13.58□□□□□ -0.23
LSM1-204ENST00000522515 PRDX2P32119 198 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 GABRA2P47869 451 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 SCAND1P57086 179 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 TAF9Q16594 264 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 BIVMQ86UB2 503 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 MUC20Q8N307 709 aaPredicted RBP13.58□□□□□ -0.23
LSM1-204ENST00000522515 Q96M66 194 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 CCL13Q99616 98 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 NICN1Q9BSH3 213 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 LPAR5Q9H1C0 372 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 ZNF581Q9P0T4 197 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 COMMD3Q9UBI1 195 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 METRNQ9UJH8 293 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 RAB22AQ9UL26 194 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 SPATA2Q9UM82 520 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 ETV7Q9Y603 341 aa13.58□□□□□ -0.23
LSM1-204ENST00000522515 A0A0A6YYD4 124 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 A0A1B0GW55 424 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 CEACAM18A8MTB9 384 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 HAND1O96004 215 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 DUX4L2P0CJ85 424 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 DUX4L3P0CJ86 424 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 DUX4L4P0CJ87 422 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 DUX4L5P0CJ88 424 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 DUX4L6P0CJ89 424 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 DUX4L7P0CJ90 424 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 IL13RA2Q14627 380 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 KCNJ8Q15842 424 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 TMEM155Q4W5P6 130 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 ATPAF1Q5TC12 328 aaPredicted RBP13.58□□□□□ -0.24
LSM1-204ENST00000522515 SHEQ5VZ18 495 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 Q6P435 159 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 DUX4L9Q6RFH8 374 aaPredicted RBP13.58□□□□□ -0.24
LSM1-204ENST00000522515 ZNF788Q6ZQV5 615 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 DCDC5Q6ZRR9 648 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 ACOT12Q8WYK0 555 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 AP3S1Q92572 193 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 PTX4Q96A99 478 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 TM2D1Q9BX74 207 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 DUX4Q9UBX2 424 aa13.58□□□□□ -0.24
LSM1-204ENST00000522515 TMPRSS2O15393 492 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 OR2H2O95918 312 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 RAB6AP20340 208 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 GABRR1P24046 479 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 SCN1BQ07699 218 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 IKZF1Q13422 519 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 SAMD12Q8N8I0 201 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 WFDC11Q8NEX6 87 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 SLC25A38Q96DW6 304 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 Q96MF0 132 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 GAFA1Q96PS6 74 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 URM1Q9BTM9 101 aaKnown RBP13.57□□□□□ -0.24
LSM1-204ENST00000522515 ITGB1BP2Q9UKP3 347 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 MAB21L2Q9Y586 359 aa13.57□□□□□ -0.24
LSM1-204ENST00000522515 IGHV4-61A0A0C4DH41 118 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 SIRPB1O00241 398 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 SH2D1BO14796 132 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 DEGS1O15121 323 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 ADAM20O43506 726 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 NDUFA2O43678 99 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 OR7C1O76099 320 aaPredicted RBP13.56□□□□□ -0.24
LSM1-204ENST00000522515 ZNF44P15621 663 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 SLC25A16P16260 332 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 CPT2P23786 658 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 COL10A1Q03692 680 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 DYNC1I2Q13409 638 aaKnown RBP13.56□□□□□ -0.24
LSM1-204ENST00000522515 SIGIRRQ6IA17 410 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 FAM89BQ8N5H3 189 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 SPICQ8N5J4 248 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 FAM216BQ8N7L0 139 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 ZNRF1Q8ND25 227 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 SDSLQ96GA7 329 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 DNTTIP1Q9H147 329 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 ZNF665Q9H7R5 613 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 SEBOXQ9HB31 216 aaPredicted RBP13.56□□□□□ -0.24
LSM1-204ENST00000522515 RHBDL2Q9NX52 303 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms