RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 C4orf26Q17RF5 130 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 HSP90B2PQ58FF3 399 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 C4orf50Q6ZRC1 276 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 BBS5Q8N3I7 341 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 BBOF1Q8ND07 529 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 PLPP5Q8NEB5 264 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 OR52E2Q8NGJ4 325 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 OR1F12Q8NHA8 337 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 SFXN5Q8TD22 340 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 CD200R1Q8TD46 325 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 GIPC3Q8TF64 312 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 OR5P2Q8WZ92 322 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 OSTF1Q92882 214 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 FGF13Q92913 245 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 TBRG4Q969Z0 631 aaKnown RBP eCLIP-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 Q96NJ1 140 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 RIT2Q99578 217 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 TMEM117Q9H0C3 514 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 TMEM185BQ9H7F4 350 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 TAC3Q9UHF0 121 aa-3.02□□□□□ -2.89
RNU6-539P-201ENST00000516665 TRAV14DV4A0A0A6YYC5 116 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 SYCE1LA8MT33 242 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 C9JQL5 133 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 ITGB1BP1O14713 200 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 CLDN3O15551 220 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 MED7O43513 233 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 SOX14O95416 240 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 TDP2O95551 362 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 FGGP02679 453 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 SERPINA7P05543 415 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 GUSBP08236 651 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 RALAP11233 206 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 CHI3L1P36222 383 aaPredicted RBP-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 GGT2P36268 569 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 APOFQ13790 326 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 TRIP10Q15642 601 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 ARMC3Q5W041 872 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 MRPL55Q7Z7F7 128 aaKnown RBP-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 KTN1-AS1Q86SY8 53 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 NIT1Q86X76 327 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 TWIST2Q8WVJ9 160 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 SNF8Q96H20 258 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 PXMP2Q9NR77 195 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 HHLA3Q9XRX5 114 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 LIPT1Q9Y234 373 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 VPS13DQ5THJ4 4388 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 PTPRJQ12913 1337 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 RTL1A6NKG5 1358 aa-3.03□□□□□ -2.89
RNU6-539P-201ENST00000516665 DNAH2Q9P225 4427 aa-3.03□□□□□ -2.9
RNU6-539P-201ENST00000516665 SMARCA4P51532 1647 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 LAMA3Q16787 3333 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 SPTBN2O15020 2390 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 A0A1W2PRD5 423 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 A0A1W2PRF3 423 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 A0A1W2PRM7 423 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 NCBP2LA6PVI3 153 aaKnown RBP-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 CLDN5O00501 218 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 CCL25O15444 150 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 PRKAB2O43741 272 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 KERAO60938 352 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 ZNF728P0DKX0 622 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 HLA-GP17693 338 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 IL32P24001 234 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 CYP2F1P24903 491 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 CLNS1AP54105 237 aaKnown RBP-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 DMTNQ08495 405 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 SPAG11BQ08648 103 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 SPRNQ5BIV9 151 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 UBE2UQ5VVX9 321 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 NPSR1Q6W5P4 371 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 SOSTDC1Q6X4U4 206 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 SLC35E3Q7Z769 313 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 DPPA2Q7Z7J5 298 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 HORMAD1Q86X24 394 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 OR9K2Q8NGE7 335 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 DEPDC1BQ8WUY9 529 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 ORAOV1Q8WV07 137 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 DOHHQ9BU89 302 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 EMC6Q9BV81 110 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 MRM3Q9HC36 420 aaKnown RBP-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 BFARQ9NZS9 450 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 FBXW2Q9UKT8 454 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 ABCC4O15439 1325 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 FANCMQ8IYD8 2048 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 SPTBP11277 2137 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 ADAMTSL3P82987 1691 aa-3.04□□□□□ -2.9
RNU6-539P-201ENST00000516665 ANAPC1Q9H1A4 1944 aa-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 ESPL1Q14674 2120 aa-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 SPTBN1Q01082 2364 aaKnown RBP-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 SPTA1P02549 2419 aa-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 IGHV3-73A0A0B4J1V6 119 aa-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 C2orf70A6NJV1 201 aa-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 TMEM212A6NML5 194 aa-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 PSPHP1O15172 72 aa-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 ORC5O43913 435 aa-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 NEBLO76041 1014 aa-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 CCL4P13236 92 aa-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 NT5EP21589 574 aa-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 PSMA2P25787 234 aa-3.05□□□□□ -2.9
RNU6-539P-201ENST00000516665 RPL28P46779 137 aaKnown RBP-3.05□□□□□ -2.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms