RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SPSB1Q96BD6 273 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 NRIP2Q9BQI9 281 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 UFSP2Q9NUQ7 469 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 LHX6Q9UPM6 363 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 NCOR2Q9Y618 2525 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TERTO14746 1132 aaKnown RBP13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 DEDDO75618 318 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 OR5H8P0DN80 308 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RPL12P30050 165 aaKnown RBP13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 CAV2P51636 162 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ZNF774Q6NX45 483 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 HAGHLQ6PII5 290 aaPredicted RBP13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ASCL4Q6XD76 172 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 FNDC9Q8TBE3 224 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 EDARADDQ8WWZ3 215 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 REEP6Q96HR9 211 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PADI1Q9ULC6 663 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 HSF4Q9ULV5 492 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 AMDHD2Q9Y303 409 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SPENQ96T58 3664 aaKnown RBP13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 FAM230AA0A1W2PPH8 454 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ACP1P24666 158 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SULT1A2P50226 295 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 DHRS11Q6UWP2 260 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 BTNL8Q6UX41 500 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SLC16A13Q7RTY0 426 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SULT4A1Q9BR01 284 aa13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RCC2Q9P258 522 aaKnown RBP13.96□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ARID1AO14497 2285 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CCDC187A0A096LP49 1063 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CBR3O75828 277 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ZNF205O95201 554 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CST4P01036 141 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 PVALBP20472 110 aaPredicted RBP13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 NME2P22392 152 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CHATP28329 748 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 OPRM1P35372 400 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 NOVA1P51513 510 aaKnown RBP13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 MLF1P58340 268 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 EIF5AP63241 154 aaKnown RBP13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CHAF1BQ13112 559 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 KRTAP27-1Q3LI81 207 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 PIP4P1Q86T03 277 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 RPS19BP1Q86WX3 136 aaKnown RBP13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 GPR137CQ8N3F9 429 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 TMEM156Q8N614 296 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 AGBL5Q8NDL9 886 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 OR1F12Q8NHA8 337 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 TMEM68Q96MH6 324 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SF3B5Q9BWJ5 86 aaKnown RBP13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FBXL17Q9UF56 701 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 IGKV1-12A0A0C4DH73 117 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 K7EPK0 472 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 MED6O75586 246 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 IGKV1D-12P01611 117 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 KLK3P07288 261 aaPredicted RBP13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FCGR3AP08637 254 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CST2P09228 141 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FCGR2CP31995 323 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 RSU1Q15404 277 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 EIF2S3LQ2VIR3 472 aaKnown RBP13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FAM71E2Q8N5Q1 922 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 DYRK2Q92630 601 aa13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 MARS2Q96GW9 593 aaKnown RBP13.95□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 A0A0G2JMM0 328 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPB8 328 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 A0A1W2PRS3 328 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 KIR3DP1A8MWS1 328 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 GAPDHP04406 335 aaKnown RBP13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FTH1P19P0C7X4 201 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 PATE4P0C8F1 98 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 DTYMKP23919 212 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 DUSP3P51452 185 aaPredicted RBP13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 RAC3P60763 192 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 TMEM42Q69YG0 159 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 EIF5AL1Q6IS14 154 aaKnown RBP13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CMSS1Q9BQ75 279 aaKnown RBP13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SEBOXQ9HB31 216 aaPredicted RBP13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CRLF2Q9HC73 371 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 TMEM38BQ9NVV0 291 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ATMQ13315 3056 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CNTRLQ7Z7A1 2325 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 A0A1W2PNU3 283 aaPredicted RBP13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 OR6C6A6NF89 314 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ZNF716A6NP11 495 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 C9JQL5 133 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 RNASEK-C17orf49H0YIS7 233 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 NTN3O00634 580 aaPredicted RBP13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CD5P06127 495 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ID4P47928 161 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 PIGPP57054 158 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 TMEM33P57088 247 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 TMEM187Q14656 261 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 RNF212Q495C1 297 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 HES3Q5TGS1 186 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 AKR7LQ8NHP1 331 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 NECAP2Q9NVZ3 263 aa13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 LSM5Q9Y4Y9 91 aaKnown RBP13.94□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FBXO24O75426 580 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 IFNA21P01568 189 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms