RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CFC1BP0CG36 223 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 CFC1P0CG37 223 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 RBMY1A1P0DJD3 496 aaKnown RBP3.12□□□□□ -1.91
USP54-217ENST00000498213 ATP6V1B1P15313 513 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 AQP2P41181 271 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 ARHGDIBP52566 201 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 EFNB2P52799 333 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 NME5P56597 212 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 FGF12P61328 243 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 ERVS71-1P61550 626 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 HOXC5Q00444 222 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 IL5RAQ01344 420 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 ENDOGQ14249 297 aaKnown RBP3.12□□□□□ -1.91
USP54-217ENST00000498213 ZBED5Q49AG3 693 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 LRRC10Q5BKY1 277 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 TEX30Q5JUR7 227 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 Q6ZR03 302 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 ZBTB49Q6ZSB9 765 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 MBOAT2Q6ZWT7 520 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 PGAP1Q75T13 922 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 OLIG3Q7RTU3 272 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 FAM122BQ7Z309 247 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 HMGN2P46Q86SG4 172 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 DHDDSQ86SQ9 333 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 COMTD1Q86VU5 262 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 FUNDC1Q8IVP5 155 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 MSRB3Q8IXL7 192 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 LRRC75AQ8NAA5 344 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 GPR32P1Q8NGA4 272 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 OR2AJ1Q8NGZ0 328 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 OR5K1Q8NHB7 308 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 AKR7LQ8NHP1 331 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 SPRYD4Q8WW59 207 aaPredicted RBP3.12□□□□□ -1.91
USP54-217ENST00000498213 GEMIN6Q8WXD5 167 aaKnown RBP3.12□□□□□ -1.91
USP54-217ENST00000498213 HDAC2Q92769 488 aaKnown RBP3.12□□□□□ -1.91
USP54-217ENST00000498213 RNF125Q96EQ8 232 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 DNAJA3Q96EY1 480 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 AKR1E2Q96JD6 320 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 TECTBQ96PL2 329 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 ATF6BQ99941 703 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 ECSITQ9BQ95 431 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 FNDC11Q9BVV2 318 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 TLNRD1Q9H1K6 362 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 HEXA-AS1Q9H8Q6 139 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 SEBOXQ9HB31 216 aaPredicted RBP3.12□□□□□ -1.91
USP54-217ENST00000498213 GID8Q9NWU2 228 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 RASL12Q9NYN1 266 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 TAS2R1Q9NYW7 299 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 CCDC167Q9P0B6 97 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 MPC1Q9Y5U8 109 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 CACNG2Q9Y698 323 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 DNAH11Q96DT5 4516 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 HSPG2P98160 4391 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 SRRM2Q9UQ35 2752 aaKnown RBP3.12□□□□□ -1.91
USP54-217ENST00000498213 TANC2Q9HCD6 1990 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 ELOVL7A1L3X0 281 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 ANKRD61A6NGH8 418 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 NKX6-3A6NJ46 265 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 ACOD1A6NK06 481 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 ANXA2P2A6NMY6 339 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 ANKRD30BLA7E2S9 258 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 CD300LBA8K4G0 201 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 PMS2P5A8MQ11 134 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 EFCAB9A8MZ26 197 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 FAM220BPB1ANY3 271 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 M0QZK8 103 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 FXYD1O00168 92 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 NDUFB3O43676 98 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 CCDC22O60826 627 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 SLC2A10O95528 541 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 IGHV4-59P01825 116 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 THY1P04216 161 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 COX4I1P13073 169 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 CCL2P13500 99 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 KDELR2P33947 212 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 TGM4P49221 684 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 GSK3BP49841 420 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 GZMMP51124 257 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 SLC7A2P52569 658 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 LINC01547P58512 204 aaPredicted RBP3.11□□□□□ -1.91
USP54-217ENST00000498213 GRB2P62993 217 aaKnown RBP3.11□□□□□ -1.91
USP54-217ENST00000498213 EGFEM1PQ0D2K5 195 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 GAGE5Q13069 117 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 GAGE6Q13070 117 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 GK2Q14410 553 aaPredicted RBP3.11□□□□□ -1.91
USP54-217ENST00000498213 PCK2Q16822 640 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 ALKBH6Q3KRA9 238 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 GTDC1Q4AE62 458 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 CLEC12AQ5QGZ9 265 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 SLC35E4Q6ICL7 350 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 MRPL21Q7Z2W9 205 aaKnown RBP3.11□□□□□ -1.91
USP54-217ENST00000498213 TSEN54Q7Z6J9 526 aaKnown RBP3.11□□□□□ -1.91
USP54-217ENST00000498213 CALHM3Q86XJ0 350 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 COMMD1Q8N668 190 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 FAM86B1Q8N7N1 296 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 SMYD1Q8NB12 490 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 OR10V1Q8NGI7 309 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 OR2T4Q8NH00 348 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 SLC7A13Q8TCU3 470 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 NSMAFQ92636 917 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 300.9 ms