RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 K7N7A8 449 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 M0R1W7 72 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 ATP6V1G2O95670 118 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 HAND1O96004 215 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 CHRM2P08172 466 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 PRKACAP17612 351 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 RAB3AP20336 220 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 WNT4P56705 351 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 BPIFB3P59826 476 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 ZP1P60852 638 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 RPL31P62899 125 aaKnown RBP12.8□□□□□ -0.36
HMGA1-206ENST00000478214 UBA52P62987 128 aaKnown RBP12.8□□□□□ -0.36
HMGA1-206ENST00000478214 BAMBIQ13145 260 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 NANOGP1Q8N7R0 232 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 PGLYRP3Q96LB9 341 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 ANKRD60Q9BZ19 345 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 FAM234AQ9H0X4 552 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 HMG20AQ9NP66 347 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 PAK1IP1Q9NWT1 392 aaPredicted RBP12.8□□□□□ -0.36
HMGA1-206ENST00000478214 ERGIC3Q9Y282 383 aa12.8□□□□□ -0.36
HMGA1-206ENST00000478214 TRBV5-5A0A0J9YX44 114 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 DNAJC9-AS1A6NH13 148 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 KDM4BO94953 1096 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 TMEM225BP0DP42 221 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 TAS2R43P59537 309 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 RPS11P62280 158 aaKnown RBP eCLIP12.79□□□□□ -0.36
HMGA1-206ENST00000478214 KLRD1Q13241 179 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 RIPK1Q13546 671 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 TMEM200BQ69YZ2 307 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 FIP1L1Q6UN15 594 aaKnown RBP12.79□□□□□ -0.36
HMGA1-206ENST00000478214 C1orf122Q6ZSJ8 110 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 SAXO1Q8IYX7 474 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 OR52N4Q8NGI2 321 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 TNFRSF14Q92956 283 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 NKX3-1Q99801 234 aaPredicted RBP12.79□□□□□ -0.36
HMGA1-206ENST00000478214 SCN3BQ9NY72 215 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 GSTK1Q9Y2Q3 226 aa12.79□□□□□ -0.36
HMGA1-206ENST00000478214 RNASEK-C17orf49H0YIS7 233 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 MAGEB3O15480 346 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 CELP19835 753 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 BLMHQ13867 455 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 ZNF146Q15072 292 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 Q499Y3 187 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 YIF1BQ5BJH7 314 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 RNLSQ5VYX0 342 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 METAP1DQ6UB28 335 aaPredicted RBP12.78□□□□□ -0.36
HMGA1-206ENST00000478214 C17orf107Q6ZR85 190 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 SATL1Q86VE3 508 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 PIP4P2Q8N4L2 257 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 ZSCAN4Q8NAM6 433 aaPredicted RBP12.78□□□□□ -0.36
HMGA1-206ENST00000478214 FAM216AQ8WUB2 273 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 MYDGFQ969H8 173 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 ZDHHC16Q969W1 377 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 SNX22Q96L94 193 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 GPER1Q99527 375 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 CDCA4Q9BXL8 241 aa12.78□□□□□ -0.36
HMGA1-206ENST00000478214 METTL8Q9H825 291 aaKnown RBP12.78□□□□□ -0.36
HMGA1-206ENST00000478214 UNKLQ9H9P5 680 aaKnown RBP12.78□□□□□ -0.36
HMGA1-206ENST00000478214 SEBOXQ9HB31 216 aaPredicted RBP12.78□□□□□ -0.36
HMGA1-206ENST00000478214 A0A0U1RQK1 487 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 A0A1W2PRD5 423 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 A0A1W2PRF3 423 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 A0A1W2PRM7 423 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 MEX3AA1L020 520 aaKnown RBP12.77□□□□□ -0.37
HMGA1-206ENST00000478214 GABRPO00591 440 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 PSPNO60542 156 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 CCL3L1P16619 93 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 GABRR1P24046 479 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 PRTN3P24158 256 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 HSPA13P48723 471 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 EDDM3BP56851 147 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 PPP3R1P63098 170 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 SLC35A2P78381 396 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 ZNF273Q14593 569 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 SPIN3Q5JUX0 258 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 GDPD3Q7L5L3 318 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 OR8H2Q8N162 312 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 TNFAIP8L1Q8WVP5 186 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 OR14A2Q96R54 314 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 OR5M11Q96RB7 305 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 CHST6Q9GZX3 395 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 PRDM13Q9H4Q3 707 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 TPRKBQ9Y3C4 175 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 PCDHGB5Q9Y5G0 923 aa12.77□□□□□ -0.37
HMGA1-206ENST00000478214 TRAV8-7A0A075B6U6 113 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 TRBV5-7A0A0A0MS05 114 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 A0A1W2PPK0 400 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 SIRPB1O00241 398 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 SH2D1BO14796 132 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 HOXA3O43365 443 aaPredicted RBP12.76□□□□□ -0.37
HMGA1-206ENST00000478214 OR2H2O95918 312 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 ALDOBP05062 364 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 IGFBP3P17936 291 aaPredicted RBP12.76□□□□□ -0.37
HMGA1-206ENST00000478214 BDKRB2P30411 391 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 ERVFRD-1P60508 538 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 ACTG1P63261 375 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 EDDM3AQ14507 147 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 IRF3Q14653 427 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 SLC9A3R2Q15599 337 aa12.76□□□□□ -0.37
HMGA1-206ENST00000478214 GRK1Q15835 563 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms