RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 RTL8AQ9BWD3 113 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 GON7Q9BXV9 100 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 NDEL1Q9GZM8 345 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 NMNAT1Q9HAN9 279 aaPredicted RBP3.56□□□□□ -1.84
USP4-209ENST00000475873 MDFICQ9P1T7 246 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 ZNF580Q9UK33 172 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 UBE2J1Q9Y385 318 aaPredicted RBP3.56□□□□□ -1.84
USP4-209ENST00000475873 LINC00312Q9Y6C7 94 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 NACAE9PAV3 2078 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 FAT3Q8TDW7 4589 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 IGLV2-18A0A075B6J9 118 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 TRBV5-3A0A0A0MS03 114 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 OOSP1A8MZH6 123 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 OR11H12B2RN74 326 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 ZNF736B4DX44 427 aaPredicted RBP3.55□□□□□ -1.84
USP4-209ENST00000475873 IGLL5B9A064 214 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 F8VVB4 439 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 F8VWA3 439 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 H0Y980 276 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 SOCS2O14508 198 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 TXNL1O43396 289 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 XRCC2O43543 280 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 SULT1B1O43704 296 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 ANP32DO95626 131 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 IGHA1P01876 353 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 IFI30P13284 250 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 LBPP18428 481 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 CDK2P24941 298 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 MAPK3P27361 379 aaPredicted RBP3.55□□□□□ -1.84
USP4-209ENST00000475873 BMI1P35226 326 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 MNDAP41218 407 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 GPR4P46093 362 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 HAAOP46952 286 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 ARHGDIBP52566 201 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 F2RL1P55085 397 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 XGP55808 180 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 B2MP61769 119 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 MEF2CQ06413 473 aaPredicted RBP3.55□□□□□ -1.84
USP4-209ENST00000475873 DYRK1AQ13627 763 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 RBM39Q14498 530 aaKnown RBP3.55□□□□□ -1.84
USP4-209ENST00000475873 ODF1Q14990 250 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 MRGPRG-AS1Q2M3A8 158 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 DEFB135Q30KP9 77 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 SMIM21Q3B7S5 101 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 TMEM177Q53S58 311 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 C6orf10Q5SRN2 563 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 SERTAD4-AS1Q5TG53 156 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 CCDC144NLQ6NUI1 221 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 HAGHLQ6PII5 290 aaPredicted RBP3.55□□□□□ -1.84
USP4-209ENST00000475873 ZBTB49Q6ZSB9 765 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 ZDHHC21Q8IVQ6 265 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 C4orf33Q8N1A6 199 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 ASCC1Q8N9N2 400 aaKnown RBP3.55□□□□□ -1.84
USP4-209ENST00000475873 ZBTB8BQ8NAP8 495 aaPredicted RBP3.55□□□□□ -1.84
USP4-209ENST00000475873 MINDY2Q8NBR6 621 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 OR52L1Q8NGH7 329 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 ZNF596Q8TC21 504 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 C2CD4CQ8TF44 421 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 ZNRF4Q8WWF5 429 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 TOMM40LQ969M1 308 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 ZIM3Q96PE6 472 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 DGCR6LQ9BY27 220 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 RAB17Q9H0T7 212 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 TMEM38AQ9H6F2 299 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 OPA3Q9H6K4 179 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 HES4Q9HCC6 221 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 VAPAQ9P0L0 249 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 GRHPRQ9UBQ7 328 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 FBXL17Q9UF56 701 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 OR14J1Q9UGF5 321 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 RIMS3Q9UJD0 308 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 PAIP2BQ9ULR5 123 aaKnown RBP3.55□□□□□ -1.84
USP4-209ENST00000475873 PLA2G2DQ9UNK4 145 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 B9D1Q9UPM9 204 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 MED31Q9Y3C7 131 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 SAR1BQ9Y6B6 198 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 COMMD3-BMI1R4GMX3 469 aa3.55□□□□□ -1.84
USP4-209ENST00000475873 A0A087X0M5 115 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 A0A1B0GX30 115 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 FAM183AA6NL82 134 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 ANXA2P2A6NMY6 339 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 NCBP2LA6PVI3 153 aaKnown RBP3.54□□□□□ -1.84
USP4-209ENST00000475873 ZNF732B4DXR9 585 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 SDHDO14521 159 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 XKRYO14609 159 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 ATP6V0E1O15342 81 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 TBX1O43435 398 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 ATP8B1O43520 1251 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 SPRY2O43597 315 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 SERPINB7O75635 380 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 SCAF4O95104 1147 aaKnown RBP3.54□□□□□ -1.84
USP4-209ENST00000475873 SERPINA1P01009 418 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 CST4P01036 141 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 IGHV3-7P01780 117 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 HSPB1P04792 205 aaKnown RBP3.54□□□□□ -1.84
USP4-209ENST00000475873 ABHD2P08910 425 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 CPEP16870 476 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 EDN2P20800 178 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 TCTAP57738 103 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 KRTAP10-2P60368 255 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms