RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 Q8IYB0 196 aa14.4□□□□□ -0.1
LIME1-202ENST00000444951 TBC1D15Q8TC07 691 aa14.4□□□□□ -0.1
LIME1-202ENST00000444951 FAM3DQ96BQ1 224 aa14.4□□□□□ -0.1
LIME1-202ENST00000444951 BCL7BQ9BQE9 202 aa14.4□□□□□ -0.1
LIME1-202ENST00000444951 LIN7BQ9HAP6 207 aa14.4□□□□□ -0.1
LIME1-202ENST00000444951 RASL12Q9NYN1 266 aa14.4□□□□□ -0.1
LIME1-202ENST00000444951 NLKQ9UBE8 527 aa14.4□□□□□ -0.1
LIME1-202ENST00000444951 TRAV38-1A0A0B4J264 116 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 MPIG6BO95866 241 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 ACAA1P09110 424 aaPredicted RBP14.39□□□□□ -0.11
LIME1-202ENST00000444951 SNRPBP14678 240 aaKnown RBP14.39□□□□□ -0.11
LIME1-202ENST00000444951 GIFP27352 417 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 MDH2P40926 338 aaKnown RBP14.39□□□□□ -0.11
LIME1-202ENST00000444951 GABRA2P47869 451 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 SCN1BQ07699 218 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 PDCD1Q15116 288 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 DGUOKQ16854 277 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 C2orf76Q3KRA6 126 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 PIGYQ3MUY2 71 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 FAM166AQ6J272 317 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 ASCL4Q6XD76 172 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 FAM90A1Q86YD7 464 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 OSR2Q8N2R0 312 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 SLC25A46Q96AG3 418 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 TMEM165Q9HC07 324 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 HMG20AQ9NP66 347 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 NDUFA13Q9P0J0 144 aa14.39□□□□□ -0.11
LIME1-202ENST00000444951 OR2AT4A6NND4 320 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 NDUFS8O00217 210 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 BPNT1O95861 308 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 UBBP0CG47 229 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 VSIG8P0DPA2 414 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 NR4A2P43354 598 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 RORCP51449 518 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 GPR176Q14439 515 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 FOXB2Q5VYV0 432 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 TEX36Q5VZQ5 186 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 FIP1L1Q6UN15 594 aaKnown RBP14.38□□□□□ -0.11
LIME1-202ENST00000444951 LRRC28Q86X40 367 aaPredicted RBP14.38□□□□□ -0.11
LIME1-202ENST00000444951 TMEM104Q8NE00 496 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 SPATA3Q8NHX4 192 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 C1orf147Q96MC9 270 aaPredicted RBP14.38□□□□□ -0.11
LIME1-202ENST00000444951 CCL13Q99616 98 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 TMEM246Q9BRR3 403 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 DCUN1D5Q9BTE7 237 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 BARHL1Q9BZE3 327 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 SELENOIQ9C0D9 397 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 CST11Q9H112 138 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 HES4Q9HCC6 221 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 PCDHB16Q9NRJ7 776 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 IL36GQ9NZH8 169 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 PCDHB10Q9UN67 800 aa14.38□□□□□ -0.11
LIME1-202ENST00000444951 RFPL4AA6NLU0 287 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 RFPL4AL1F8VTS6 287 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 ZNF780AO75290 641 aaPredicted RBP14.37□□□□□ -0.11
LIME1-202ENST00000444951 PAHP00439 452 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 PSG2P11465 335 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 GTF2F2P13984 249 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 MUC1P15941 1255 aaPredicted RBP14.37□□□□□ -0.11
LIME1-202ENST00000444951 MGMTP16455 207 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 FGF12P61328 243 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 PLA2G7Q13093 441 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 TMEM249Q2WGJ8 235 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 ZNF404Q494X3 552 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 LYPD2Q6UXB3 125 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 LGALS14Q8TCE9 139 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 DGCR14Q96DF8 476 aaKnown RBP14.37□□□□□ -0.11
LIME1-202ENST00000444951 GHRLQ9UBU3 117 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 OR5V1Q9UGF6 321 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 ST3GAL6Q9Y274 331 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 MALRD1Q5VYJ5 2156 aa14.37□□□□□ -0.11
LIME1-202ENST00000444951 IGKV1D-17A0A075B6S4 117 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 TMEM272A0A1B0GTI8 110 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 A8MV72 311 aaPredicted RBP14.36□□□□□ -0.11
LIME1-202ENST00000444951 VWC2LB2RUY7 222 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 ADAM20O43506 726 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 KNG1P01042 644 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 GABRR1P24046 479 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 PRDX2P32119 198 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 BMXP51813 675 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 IKZF1Q13422 519 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 UNC119Q13432 240 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 KCNJ8Q15842 424 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 STUMQ69YW2 141 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 ELP2Q6IA86 826 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 CROCCP3Q8IVE0 287 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 MUC20Q8N307 709 aaPredicted RBP14.36□□□□□ -0.11
LIME1-202ENST00000444951 KCNG3Q8TAE7 436 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 TMEM59Q9BXS4 323 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 METRNQ9UJH8 293 aa14.36□□□□□ -0.11
LIME1-202ENST00000444951 IGHV4-61A0A0C4DH41 118 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 A0A1B0GW55 424 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 NKX6-3A6NJ46 265 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 CEACAM18A8MTB9 384 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 SIRPB1O00241 398 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 TMPRSS2O15393 492 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 HAND1O96004 215 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 DUX4L2P0CJ85 424 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 DUX4L3P0CJ86 424 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 DUX4L4P0CJ87 422 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms