RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 DENRO43583 198 aaKnown RBP15.39■□□□□ 0.05
SHH-203ENST00000435425 TCF21O43680 179 aa15.39■□□□□ 0.05
SHH-203ENST00000435425 KDM4BO94953 1096 aa15.39■□□□□ 0.05
SHH-203ENST00000435425 HAND1O96004 215 aa15.39■□□□□ 0.05
SHH-203ENST00000435425 CD1AP06126 327 aa15.39■□□□□ 0.05
SHH-203ENST00000435425 KRTAP21-3Q3LHN1 58 aa15.39■□□□□ 0.05
SHH-203ENST00000435425 SAXO1Q8IYX7 474 aa15.39■□□□□ 0.05
SHH-203ENST00000435425 BCL6BQ8N143 479 aaPredicted RBP15.39■□□□□ 0.05
SHH-203ENST00000435425 OR4M1Q8NGD0 313 aa15.39■□□□□ 0.05
SHH-203ENST00000435425 TBX15Q96SF7 602 aa15.39■□□□□ 0.05
SHH-203ENST00000435425 MS4A7Q9GZW8 240 aaPredicted RBP15.39■□□□□ 0.05
SHH-203ENST00000435425 SIRPDQ9H106 197 aa15.39■□□□□ 0.05
SHH-203ENST00000435425 HMG20AQ9NP66 347 aa15.39■□□□□ 0.05
SHH-203ENST00000435425 ING4Q9UNL4 249 aa15.39■□□□□ 0.05
SHH-203ENST00000435425 JMJD1CQ15652 2540 aa15.39■□□□□ 0.05
SHH-203ENST00000435425 TRBV5-7A0A0A0MS05 114 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 TK1P04183 234 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 MAS1P04201 325 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 ALDOBP05062 364 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 IGFBP3P17936 291 aaPredicted RBP15.38■□□□□ 0.05
SHH-203ENST00000435425 FPR2P25090 351 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 ZNF93P35789 620 aaPredicted RBP15.38■□□□□ 0.05
SHH-203ENST00000435425 OR3A4PP47883 348 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 SCN1BQ07699 218 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 INSL4Q14641 139 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 LIPKQ5VXJ0 399 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 PDZD9Q8IXQ8 264 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 ZSCAN4Q8NAM6 433 aaPredicted RBP15.38■□□□□ 0.05
SHH-203ENST00000435425 OR10K1Q8NGX5 313 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 ZNF418Q8TF45 676 aaPredicted RBP15.38■□□□□ 0.05
SHH-203ENST00000435425 UFD1Q92890 307 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 LHX4Q969G2 390 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 DERL3Q96Q80 235 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 NR1H4Q96RI1 486 aaPredicted RBP15.38■□□□□ 0.05
SHH-203ENST00000435425 NOX4Q9NPH5 578 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 C19orf12Q9NSK7 152 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 GLS2Q9UI32 602 aa15.38■□□□□ 0.05
SHH-203ENST00000435425 SOX21Q9Y651 276 aaPredicted RBP15.38■□□□□ 0.05
SHH-203ENST00000435425 MAGEA13PA6NCF6 341 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 SIRPB1O00241 398 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 MMP9P14780 707 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 GABRR1P24046 479 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 PRB3Q04118 309 aaPredicted RBP15.37■□□□□ 0.05
SHH-203ENST00000435425 PDCD1Q15116 288 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 ACSM3Q53FZ2 586 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 GPR157Q5UAW9 335 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 BRD3OSQ6XYD6 125 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 VMO1Q7Z5L0 202 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 CMTM4Q8IZR5 234 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 C8orf46Q8TAG6 207 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 TMEM203Q969S6 136 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 CHST6Q9GZX3 395 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 EXOSC4Q9NPD3 245 aaKnown RBP15.37■□□□□ 0.05
SHH-203ENST00000435425 SVEP1Q4LDE5 3571 aa15.37■□□□□ 0.05
SHH-203ENST00000435425 TMEM82A0PJX8 343 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 K7N7A8 449 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 SH2D1BO14796 132 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 PIN1P1O15428 100 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 GPX5O75715 221 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 CDRT1O95170 752 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 HTR3BO95264 441 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 FSTP19883 344 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 MAPK3P27361 379 aaPredicted RBP15.36■□□□□ 0.05
SHH-203ENST00000435425 DLX1P56177 255 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 EDDM3BP56851 147 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 RPL31P62899 125 aaKnown RBP15.36■□□□□ 0.05
SHH-203ENST00000435425 EDDM3AQ14507 147 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 RSU1Q15404 277 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 SPIN3Q5JUX0 258 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 RUSC1-AS1Q66K80 236 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 GDPD3Q7L5L3 318 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 MS4A15Q8N5U1 240 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 SNX22Q96L94 193 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 FAM234AQ9H0X4 552 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 SIRT7Q9NRC8 400 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 FOXJ3Q9UPW0 622 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 KPTNQ9Y664 436 aa15.36■□□□□ 0.05
SHH-203ENST00000435425 TRBV23-1A0A0A0MS06 115 aa15.35■□□□□ 0.05
SHH-203ENST00000435425 MEX3AA1L020 520 aaKnown RBP15.35■□□□□ 0.05
SHH-203ENST00000435425 ZNF737O75373 536 aa15.35■□□□□ 0.05
SHH-203ENST00000435425 ZNF44P15621 663 aa15.35■□□□□ 0.05
SHH-203ENST00000435425 PTGFRP43088 359 aa15.35■□□□□ 0.05
SHH-203ENST00000435425 ZNF146Q15072 292 aa15.35■□□□□ 0.05
SHH-203ENST00000435425 FAM27D1Q5T7N8 215 aa15.35■□□□□ 0.05
SHH-203ENST00000435425 CEACAM19Q7Z692 300 aa15.35■□□□□ 0.05
SHH-203ENST00000435425 JAGN1Q8N5M9 183 aa15.35■□□□□ 0.05
SHH-203ENST00000435425 PXT1Q8NFP0 134 aa15.35■□□□□ 0.05
SHH-203ENST00000435425 S100A13Q99584 98 aa15.35■□□□□ 0.05
SHH-203ENST00000435425 MGLLQ99685 303 aa15.35■□□□□ 0.05
SHH-203ENST00000435425 SUCNR1Q9BXA5 334 aa15.35■□□□□ 0.05
SHH-203ENST00000435425 CUBNO60494 3623 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 CENPVL3A0A0U1RRI6 287 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 PSPNO60542 156 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 VENTXO95231 258 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 OR2H2O95918 312 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 MTNR1BP49286 362 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 GABARAPL2P60520 117 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 RPS25P62851 125 aaKnown RBP15.34■□□□□ 0.05
SHH-203ENST00000435425 MLLT11Q13015 90 aaPredicted RBP15.34■□□□□ 0.05
SHH-203ENST00000435425 GPR50Q13585 617 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms