RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 FAHD2AQ96GK7 314 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 SPATA13Q96N96 652 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 WFIKKN1Q96NZ8 548 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 RNF157Q96PX1 679 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 OR2A7Q96R45 310 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 CLCC1Q96S66 551 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 ATP6V0BQ99437 205 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 RNF2Q99496 336 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 WRAP53Q9BUR4 548 aaKnown RBP2.31□□□□□ -2.04
LINC01040-201ENST00000425048 ZNF426Q9BUY5 554 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 CDCA4Q9BXL8 241 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 NLNQ9BYT8 704 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 NMNAT2Q9BZQ4 307 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 TMEM117Q9H0C3 514 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 HDHD2Q9H0R4 259 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 C20orf85Q9H1P6 137 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 OR52A5Q9H2C5 316 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 TMEM38AQ9H6F2 299 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 METTL17Q9H7H0 456 aaPredicted RBP2.31□□□□□ -2.04
LINC01040-201ENST00000425048 KIR3DX1Q9H7L2 352 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 TUBA4BQ9H853 241 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 WFDC1Q9HC57 220 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 TREX1Q9NSU2 369 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 NLE1Q9NVX2 485 aaPredicted RBP2.31□□□□□ -2.04
LINC01040-201ENST00000425048 RBM22Q9NW64 420 aaKnown RBP eCLIP2.31□□□□□ -2.04
LINC01040-201ENST00000425048 DMAC2Q9NW81 257 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 MARCH5Q9NX47 278 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 CCDC167Q9P0B6 97 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 STOX2Q9P2F5 926 aaPredicted RBP2.31□□□□□ -2.04
LINC01040-201ENST00000425048 DUX4Q9UBX2 424 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 OPN4Q9UHM6 478 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 ZNF225Q9UK10 706 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 DKKL1Q9UK85 242 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 OR52A1Q9UKL2 312 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 FBXL3Q9UKT7 428 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 BTRCQ9Y297 605 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 LSM2Q9Y333 95 aaKnown RBP2.31□□□□□ -2.04
LINC01040-201ENST00000425048 MRPS2Q9Y399 296 aaKnown RBP2.31□□□□□ -2.04
LINC01040-201ENST00000425048 NEUROG3Q9Y4Z2 214 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 LOC285556D6RIA3 1793 aa2.31□□□□□ -2.04
LINC01040-201ENST00000425048 XIRP1Q702N8 1843 aaKnown RBP2.31□□□□□ -2.04
LINC01040-201ENST00000425048 ATG2AQ2TAZ0 1938 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 HEATR5AQ86XA9 2040 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 A0A0G2JN53 185 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 A0A0J9YYE9 177 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 TRBV11-1A0A0K0K1C0 115 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 TMEM269A0A1B0GVZ9 245 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 A0A1W2PRV1 198 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 TRAPPC13A5PLN9 417 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 IDSB3KWA1 339 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 SEC14L6B5MCN3 397 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 LRRN3E7EW58 273 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 SULT2B1O00204 365 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 CCL25O15444 150 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 ST8SIA3O43173 380 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 ZNF264O43296 627 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 TPST2O60704 377 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 SLC19A2O60779 497 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 SCN2BO60939 215 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 RDH16O75452 317 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 EEDO75530 441 aaKnown RBP2.3□□□□□ -2.04
LINC01040-201ENST00000425048 OR2J2O76002 312 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 B3GAT3O94766 335 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 CDRT1O95170 752 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 BRI3O95415 125 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 JCHAINP01591 159 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 TCRBP04435 133 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 SOD3P08294 240 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 GKN3PP0CG01 181 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 UBBP0CG47 229 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 UBCP0CG48 685 aaKnown RBP2.3□□□□□ -2.04
LINC01040-201ENST00000425048 CD79AP11912 226 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 TDGF1P13385 188 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 GGT1P19440 569 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 FGF7P21781 194 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 BCKDHBP21953 392 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 CD82P27701 267 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 BRS3P32247 399 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 APLNRP35414 380 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 SLC1A2P43004 574 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 BDKRB1P46663 353 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 NOVA1P51513 510 aaKnown RBP2.3□□□□□ -2.04
LINC01040-201ENST00000425048 ZNF136P52737 540 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 ACLYP53396 1101 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 C1QTNF8P60827 252 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 RPS4XP62701 263 aaKnown RBP2.3□□□□□ -2.04
LINC01040-201ENST00000425048 UBA52P62987 128 aaKnown RBP2.3□□□□□ -2.04
LINC01040-201ENST00000425048 PPP3R1P63098 170 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 VLDLRP98155 873 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 REEP5Q00765 189 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 CHRNB3Q05901 458 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 SLAQ13239 276 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 SRSF5Q13243 272 aaKnown RBP2.3□□□□□ -2.04
LINC01040-201ENST00000425048 HTR4Q13639 388 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 C5orf64Q2M2E5 130 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 GOLGA7BQ2TAP0 167 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 SLC36A2Q495M3 483 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 NKAIN1Q4KMZ8 207 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 MPPE1Q53F39 396 aa2.3□□□□□ -2.04
LINC01040-201ENST00000425048 CARD16Q5EG05 197 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms