RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 MYBPHQ13203 477 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 RAB32Q13637 225 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 CD226Q15762 336 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 FDX2Q6P4F2 183 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 RNASEKQ6P5S7 137 aaKnown RBP5.42□□□□□ -1.54
SCN1A-203ENST00000409050 C12orf54Q6X4T0 127 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM116Q8NCL8 245 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 OR4B1Q8NGF8 309 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 KTI12Q96EK9 354 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-203ENST00000409050 RAB33BQ9H082 229 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 RAB1BQ9H0U4 201 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF576Q9H609 170 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 IL21Q9HBE4 155 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 ASB1Q9Y576 335 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 GLI3P10071 1580 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 MFSD2BA6NFX1 497 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 AKR7A2O43488 359 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 ZFPL1O95159 310 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 WNT1P04628 370 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 COX6CP09669 75 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 SFTPCP11686 197 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 FAHP16930 419 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 PTGER1P34995 402 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 PPOXP50336 477 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 GAMTQ14353 236 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF273Q14593 569 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 KCNAB1Q14722 419 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 COL5A1-AS1Q5SY13 56 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 PWWP2BQ6NUJ5 590 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM130Q8N3G9 435 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 TP53I13Q8NBR0 393 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-203ENST00000409050 OR4D9Q8NGE8 314 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 ASB5Q8WWX0 329 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 C6orf106Q9H6K1 298 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-203ENST00000409050 LTB4R2Q9NPC1 389 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 WNT16Q9UBV4 365 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 NEU3Q9UQ49 428 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 NRAPQ86VF7 1730 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 C21orf140B9A014 251 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 TNFSF14O43557 240 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 CEACAM6P40199 344 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 GNB1P62873 340 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 HFEQ30201 348 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 CALHM1Q8IU99 346 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 OR5AS1Q8N127 324 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 NECAP1Q8NC96 275 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 OR4C3Q8NH37 302 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 WFDC5Q8TCV5 224 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 ASB10Q8WXI3 467 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 MARS2Q96GW9 593 aaKnown RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 SMIM14Q96QK8 99 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 MED29Q9NX70 200 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 PLEKHB1Q9UF11 243 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 OPN4Q9UHM6 478 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 K7EQS6 105 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 PEX11BO96011 259 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 HSPB1P04792 205 aaKnown RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 KIR2DL1P43626 348 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 KIR2DL2P43627 348 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 KLF3P57682 345 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 PMP22Q01453 160 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 Q3ZCU0 254 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 DHRS7BQ6IAN0 325 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 C8orf82Q6P1X6 216 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 INO80CQ6PI98 192 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 OR1L3Q8NH93 324 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 RLN3Q8WXF3 142 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 ARHGAP5-AS1Q96IT6 56 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 IL36GQ9NZH8 169 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 NUP98P52948 1817 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 A0A1W2PNR3 127 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 NRG2O14511 850 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 B4GALT3O60512 393 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 P01737 135 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 OPRK1P41145 380 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 MEOX1P50221 254 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM33P57088 247 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 RAE1P78406 368 aaKnown RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 Q56UQ5 140 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 C9orf152Q5JTZ5 239 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM215Q68D42 235 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 ACSM6Q6P461 480 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 Q8WTZ3 238 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 COX14Q96I36 57 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 ST6GAL2Q96JF0 529 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 RNF167Q9H6Y7 350 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 CACNG5Q9UF02 275 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 ERRFI1Q9UJM3 462 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 A0A0U1RQS6 177 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 TNFSF11O14788 317 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 ACAA1P09110 424 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 ID1P41134 155 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 SKP2Q13309 424 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 PMS2P11Q13670 270 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 C1orf53Q5VUE5 145 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 RHBDD2Q6NTF9 364 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 HOGA1Q86XE5 327 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 BPIFA4PQ86YQ2 179 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 MRPL30Q8TCC3 161 aaKnown RBP5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms