RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PSMB9P28065 219 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 CHATP28329 748 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 ART1P52961 327 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 SFXN4Q6P4A7 337 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 OSR2Q8N2R0 312 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 LINC01356Q8N9X3 169 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 WFDC11Q8NEX6 87 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 OR5D13Q8NGL4 314 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 KCNG3Q8TAE7 436 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 CCDC90BQ9GZT6 254 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 SIRPDQ9H106 197 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 SMURF1Q9HCE7 757 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 TCF7L1Q9HCS4 588 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 TAS2R3Q9NYW6 316 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 RAB22AQ9UL26 194 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 UBE2J1Q9Y385 318 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-202ENST00000394943 MAB21L2Q9Y586 359 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 IGHV2-70DA0A0C4DH43 119 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 TMEM82A0PJX8 343 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 NPIPB11E5RHQ5 1161 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 AIREO43918 545 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 PTBP1P26599 531 aaKnown RBP eCLIP5.81□□□□□ -1.48
LIMA1-202ENST00000394943 NPBWR2P48146 333 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 RSBN1Q5VWQ0 802 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-202ENST00000394943 WDR25Q64LD2 544 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-202ENST00000394943 ZNF497Q6ZNH5 498 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 GPR141Q7Z602 305 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 BHLHE23Q8NDY6 225 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 Q96MF0 132 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 FAM192AQ9GZU8 254 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 SPACA1Q9HBV2 294 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 SCOCQ9UIL1 159 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 MRPS28Q9Y2Q9 187 aaKnown RBP5.81□□□□□ -1.48
LIMA1-202ENST00000394943 TMEM272A0A1B0GTI8 110 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 H3BMQ9 156 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 TK1P04183 234 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 MYL9P24844 172 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 PRDX2P32119 198 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 RPS19P39019 145 aaKnown RBP5.8□□□□□ -1.48
LIMA1-202ENST00000394943 CD276Q5ZPR3 534 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 C22orf42Q6IC83 251 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 ZNF826PQ6ZT77 177 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 PNLDC1Q8NA58 520 aaKnown RBP5.8□□□□□ -1.48
LIMA1-202ENST00000394943 OR52M1Q8NGK5 317 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 OR51F2Q8NH61 342 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 DVL3Q92997 716 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-202ENST00000394943 ISOC1Q96CN7 298 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 SLC25A38Q96DW6 304 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 PERPQ96FX8 193 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 SLIRPQ9GZT3 109 aaKnown RBP5.8□□□□□ -1.48
LIMA1-202ENST00000394943 OR5V1Q9UGF6 321 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 KPTNQ9Y664 436 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 LRBAP50851 2863 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 KIR2DS1A0A191URI9 304 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 MFNGO00587 321 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 CTDSPLO15194 276 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 SSX4O60224 188 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 FOXH1O75593 365 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 HEXAP06865 529 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 IRF2P14316 349 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 NEDD8Q15843 81 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 SLC25A26Q70HW3 274 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 OR8H2Q8N162 312 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 VRK1Q99986 396 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-202ENST00000394943 GAL3ST1Q99999 423 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 ADAM30Q9UKF2 790 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 CRYBG3Q68DQ2 2970 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 TRAPPC2LH3BP13 241 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 MAGEB3O15480 346 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 HAND1O96004 215 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 PLATP00750 562 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 CALRP27797 417 aaKnown RBP5.8□□□□□ -1.48
LIMA1-202ENST00000394943 IL2RGP31785 369 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 CD80P33681 288 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 SOX2P48431 317 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 MSMO1Q15800 293 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 RAB11BQ15907 218 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 MICBQ29980 383 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 TMEM249Q2WGJ8 235 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 FOXB2Q5VYV0 432 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 LYPD2Q6UXB3 125 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 ANGPTL5Q86XS5 388 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 SLAMF9Q96A28 289 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 UPRTQ96BW1 309 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 ZNF107Q9UII5 783 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-202ENST00000394943 PCNX1Q96RV3 2341 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 LRRK2Q5S007 2527 aa5.8□□□□□ -1.48
LIMA1-202ENST00000394943 B4DSR2 109 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 FAM157AC9JC47 383 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 RAB27BO00194 218 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 F2RL2O00254 374 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 MGST3O14880 152 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 ZNF182P17025 639 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-202ENST00000394943 GLRA1P23415 457 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 ZFP36P26651 326 aaKnown RBP5.79□□□□□ -1.48
LIMA1-202ENST00000394943 IL13RA1P78552 427 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 PNLIPRP3Q17RR3 467 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 TRAT1Q6PIZ9 186 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 GLIPR1L1Q6UWM5 242 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 Q6ZPA2 131 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms