RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 ONECUT1Q9UBC0 465 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 FBN1P35555 2871 aaKnown RBP11.02□□□□□ -0.65
VPS28-202ENST00000377348 TRAV40A0A0B4J280 105 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 GPR37O15354 613 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 GPX5O75715 221 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 CDRT1O95170 752 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 HAND1O96004 215 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 IFNA2P01563 188 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 TK1P04183 234 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 LIPFP07098 398 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 CHRM2P08172 466 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 MMP9P14780 707 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 FSTP19883 344 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 GP2P55259 537 aaKnown RBP11.02□□□□□ -0.65
VPS28-202ENST00000377348 GABARAPL2P60520 117 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 RPS25P62851 125 aaKnown RBP11.02□□□□□ -0.65
VPS28-202ENST00000377348 PRB3Q04118 309 aaPredicted RBP11.02□□□□□ -0.65
VPS28-202ENST00000377348 TPBGQ13641 420 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 TBCEQ15813 527 aaPredicted RBP11.02□□□□□ -0.65
VPS28-202ENST00000377348 ACSM3Q53FZ2 586 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 SAXO1Q8IYX7 474 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 TEX29Q8N6K0 151 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 ZSCAN4Q8NAM6 433 aaPredicted RBP11.02□□□□□ -0.65
VPS28-202ENST00000377348 OR4M1Q8NGD0 313 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 UPRTQ96BW1 309 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 WDFY2Q96P53 400 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 TBX15Q96SF7 602 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 MGLLQ99685 303 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 SIRPDQ9H106 197 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 OCEL1Q9H607 264 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 ACOT13Q9NPJ3 140 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 CKLFQ9UBR5 152 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 GSTK1Q9Y2Q3 226 aa11.02□□□□□ -0.65
VPS28-202ENST00000377348 SOX21Q9Y651 276 aaPredicted RBP11.02□□□□□ -0.65
VPS28-202ENST00000377348 A0A1W2PQ09 198 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 TMEM82A0PJX8 343 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 MEX3AA1L020 520 aaKnown RBP11.01□□□□□ -0.65
VPS28-202ENST00000377348 ZNF737O75373 536 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 TOX4O94842 621 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 ZNF93P35789 620 aaPredicted RBP11.01□□□□□ -0.65
VPS28-202ENST00000377348 DLX1P56177 255 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 EMX1Q04741 257 aaPredicted RBP11.01□□□□□ -0.65
VPS28-202ENST00000377348 MLLT11Q13015 90 aaPredicted RBP11.01□□□□□ -0.65
VPS28-202ENST00000377348 PDCD1Q15116 288 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 C11orf91Q3C1V1 193 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 METTL11BQ5VVY1 283 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 FIP1L1Q6UN15 594 aaKnown RBP11.01□□□□□ -0.65
VPS28-202ENST00000377348 UNQ9370/PRO34162Q6UXP9 181 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 FAM185AQ8N0U4 392 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 BCL6BQ8N143 479 aaPredicted RBP11.01□□□□□ -0.65
VPS28-202ENST00000377348 MS4A15Q8N5U1 240 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 C8orf46Q8TAG6 207 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 CPNE2Q96FN4 548 aaPredicted RBP11.01□□□□□ -0.65
VPS28-202ENST00000377348 SLC6A7Q99884 636 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 CHST6Q9GZX3 395 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 ISYNA1Q9NPH2 558 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 C19orf12Q9NSK7 152 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 ZNF69Q9UC07 566 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 NUP50Q9UKX7 468 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 ING4Q9UNL4 249 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 FOXJ3Q9UPW0 622 aa11.01□□□□□ -0.65
VPS28-202ENST00000377348 K7N7A8 449 aa11□□□□□ -0.65
VPS28-202ENST00000377348 SIRPB1O00241 398 aa11□□□□□ -0.65
VPS28-202ENST00000377348 PSPNO60542 156 aa11□□□□□ -0.65
VPS28-202ENST00000377348 SC5DO75845 299 aa11□□□□□ -0.65
VPS28-202ENST00000377348 CPEP16870 476 aa11□□□□□ -0.65
VPS28-202ENST00000377348 GABRR1P24046 479 aa11□□□□□ -0.65
VPS28-202ENST00000377348 MAPK3P27361 379 aaPredicted RBP11□□□□□ -0.65
VPS28-202ENST00000377348 PTGFRP43088 359 aa11□□□□□ -0.65
VPS28-202ENST00000377348 GPR50Q13585 617 aa11□□□□□ -0.65
VPS28-202ENST00000377348 ZNF146Q15072 292 aa11□□□□□ -0.65
VPS28-202ENST00000377348 C17orf107Q6ZR85 190 aa11□□□□□ -0.65
VPS28-202ENST00000377348 ZNF367Q7RTV3 350 aa11□□□□□ -0.65
VPS28-202ENST00000377348 CEACAM19Q7Z692 300 aa11□□□□□ -0.65
VPS28-202ENST00000377348 PHC2Q8IXK0 858 aa11□□□□□ -0.65
VPS28-202ENST00000377348 PDZD9Q8IXQ8 264 aa11□□□□□ -0.65
VPS28-202ENST00000377348 SPARTQ8N0X7 666 aa11□□□□□ -0.65
VPS28-202ENST00000377348 JAGN1Q8N5M9 183 aa11□□□□□ -0.65
VPS28-202ENST00000377348 Q8N7P7 452 aa11□□□□□ -0.65
VPS28-202ENST00000377348 PXT1Q8NFP0 134 aa11□□□□□ -0.65
VPS28-202ENST00000377348 NR1H4Q96RI1 486 aaPredicted RBP11□□□□□ -0.65
VPS28-202ENST00000377348 PPIL3Q9H2H8 161 aaKnown RBP11□□□□□ -0.65
VPS28-202ENST00000377348 EXOSC4Q9NPD3 245 aaKnown RBP11□□□□□ -0.65
VPS28-202ENST00000377348 SIRT7Q9NRC8 400 aa11□□□□□ -0.65
VPS28-202ENST00000377348 SF3B6Q9Y3B4 125 aaKnown RBP11□□□□□ -0.65
VPS28-202ENST00000377348 TRBV23-1A0A0A0MS06 115 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 HTR3BO95264 441 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 OR2H2O95918 312 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 MTNR1BP49286 362 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 EDDM3BP56851 147 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 RPL31P62899 125 aaKnown RBP10.99□□□□□ -0.65
VPS28-202ENST00000377348 SCN1BQ07699 218 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 EDDM3AQ14507 147 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 RSU1Q15404 277 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 SSX1Q16384 188 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 SPIN3Q5JUX0 258 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 RUSC1-AS1Q66K80 236 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 ASCL4Q6XD76 172 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 BRD3OSQ6XYD6 125 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 TMEM91Q6ZNR0 172 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms