RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 FGF23Q9GZV9 251 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 TMEM100Q9NV29 134 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 ZNF407Q9C0G0 2248 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 FCGR2CP31995 323 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 MEOX1P50221 254 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 C3AR1Q16581 482 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 TMEM211Q6ICI0 200 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 CNTNAP3BQ96NU0 1288 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 AIFM2Q9BRQ8 373 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 CNTNAP3Q9BZ76 1288 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 ZNF286AQ9HBT8 521 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 GLS2Q9UI32 602 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 NME2P1O60361 137 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 CD79AP11912 226 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 NME2P22392 152 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 PMELP40967 661 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 PRDX4Q13162 271 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 GGNBP1Q5YKI7 109 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 MDS2Q8NDY4 140 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 BPIFCQ8NFQ6 507 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 TMED6Q8WW62 240 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 MARC2Q969Z3 335 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 MRPL24Q96A35 216 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 POM121Q96HA1 1249 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 PIGMQ9H3S5 423 aa17.94■□□□□ 0.46
CCDC88B-203ENST00000359902 OR7C1O76099 320 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 FXYD4P59646 89 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 HES3Q5TGS1 186 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 TFAP2EQ6VUC0 442 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 NUFIP2Q7Z417 695 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 FOXRED2Q8IWF2 684 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 BOLLQ8N9W6 283 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 APOBEC3DQ96AK3 386 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 IP6K3Q96PC2 410 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 ZNF442Q9H7R0 627 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 TUBD1Q9UJT1 453 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 KCNIP3Q9Y2W7 256 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 KLF13Q9Y2Y9 288 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 R4GN57 208 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 IFNA21P01568 189 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 RAB1AP62820 205 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 SPEM2Q0P670 501 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 SP6Q3SY56 376 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 MRPL21Q7Z2W9 205 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 TMEM200AQ86VY9 491 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 HPSE2Q8WWQ2 592 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 RTN4IP1Q8WWV3 396 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 NAA60Q9H7X0 242 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 ASF1BQ9NVP2 202 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 STARD10Q9Y365 291 aa17.93■□□□□ 0.46
CCDC88B-203ENST00000359902 DNAJC13O75165 2243 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 HKR1P10072 659 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 ATF4P18848 351 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 TMEM187Q14656 261 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 RNPS1Q15287 305 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 ABCA11PQ4W5N1 156 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 RNF141Q8WVD5 230 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 GALNT14Q96FL9 552 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 FER1L6-AS2Q96M78 137 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 ZNF629Q9UEG4 869 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 KLRC4-KLRK1H3BQV0 150 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 SS18L1O75177 396 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 NGFP01138 241 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 APOC3P02656 99 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 OR5AC1P0C628 307 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM157CP0CG43 387 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 BCL3P20749 454 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 ARR3P36575 388 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 GPM6AP51674 278 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 LHFPL5Q8TAF8 219 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 POM121L2Q96KW2 1035 aa17.92■□□□□ 0.46
CCDC88B-203ENST00000359902 SIGLEC5O15389 551 aa17.91■□□□□ 0.46
CCDC88B-203ENST00000359902 CST4P01036 141 aa17.91■□□□□ 0.46
CCDC88B-203ENST00000359902 CEACAM21Q3KPI0 293 aa17.91■□□□□ 0.46
CCDC88B-203ENST00000359902 CCDC36Q8IYA8 594 aa17.91■□□□□ 0.46
CCDC88B-203ENST00000359902 SLAMF9Q96A28 289 aa17.91■□□□□ 0.46
CCDC88B-203ENST00000359902 MOB3AQ96BX8 217 aa17.91■□□□□ 0.46
CCDC88B-203ENST00000359902 LIPGQ9Y5X9 500 aa17.91■□□□□ 0.46
CCDC88B-203ENST00000359902 BDP1A6H8Y1 2624 aa17.91■□□□□ 0.46
CCDC88B-203ENST00000359902 CELSR3Q9NYQ7 3312 aa17.91■□□□□ 0.46
CCDC88B-203ENST00000359902 RAB19A4D1S5 217 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 HAAOP46952 286 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 SLC10A1Q14973 349 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 PHLDA2Q53GA4 152 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM122CQ6P4D5 195 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 ATRAIDQ6UW56 229 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 ZDHHC23Q8IYP9 409 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 SAXO1Q8IYX7 474 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 HS3ST6Q96QI5 342 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 LDAHQ9H6V9 325 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 OR2S2Q9NQN1 319 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 SLC2A9Q9NRM0 540 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A10PA6NDY2 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A18PA6NE21 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A16PA6NEW6 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A20PA6NIJ5 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A8PA6NJQ4 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A7PA6NKC0 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A22PA8MWA6 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A12PA8MX19 464 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms