RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 SLC7A11Q9UPY5 501 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 ORC6Q9Y5N6 252 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 INSIG2Q9Y5U4 225 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 MUC5ACP98088 5654 aa0.51□□□□□ -2.33
SCN1A-208ENST00000625916 STRCP1A6NGW2 1772 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 SETD1AO15047 1707 aaKnown RBP0.5□□□□□ -2.33
SCN1A-208ENST00000625916 SYNJ2BP-COX16A0A087WUM0 186 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 F5H5T6 163 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 KLRC4-KLRK1H3BQV0 150 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 COX7A2P2O60397 106 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 RHOCP08134 193 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 CTLA4P16410 223 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 PAX6P26367 422 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 IMPA1P29218 277 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 HTR2BP41595 481 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 PAFAH1B2P68402 229 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 HMGN5P82970 282 aaKnown RBP0.5□□□□□ -2.33
SCN1A-208ENST00000625916 RCN1Q15293 331 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 SSX1Q16384 188 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 TMEM241Q24JQ0 296 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 TTC32Q5I0X7 151 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 N4BP2L1Q5TBK1 243 aaPredicted RBP0.5□□□□□ -2.33
SCN1A-208ENST00000625916 SLC25A25Q6KCM7 469 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 ZNF773Q6PK81 442 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 CLEC19AQ6UXS0 136 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 BZW1Q7L1Q6 419 aaKnown RBP0.5□□□□□ -2.33
SCN1A-208ENST00000625916 C2orf73Q8N5S3 287 aaPredicted RBP0.5□□□□□ -2.33
SCN1A-208ENST00000625916 PQLC3Q8N755 202 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 C8orf31Q8N9H6 132 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 OR4K2Q8NGD2 314 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 OR2K2Q8NGT1 345 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 BLNKQ8WV28 456 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 TSEN15Q8WW01 171 aaKnown RBP0.5□□□□□ -2.33
SCN1A-208ENST00000625916 YPEL4Q96NS1 127 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 SPACA5Q96QH8 159 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 GABRG3Q99928 467 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 OR51B5Q9H339 312 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 ELOVL6Q9H5J4 265 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 CCL26Q9Y258 94 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 HSPE1-MOB4S4R3N1 261 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 DOCK6Q96HP0 2047 aa0.5□□□□□ -2.33
SCN1A-208ENST00000625916 ADGRB3O60242 1522 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 INSRP06213 1382 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 A0A075B6Q4 140 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 IGHV2OR16-5A0A0B4J2B6 119 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 SIGLEC16A6NMB1 481 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 KNCNA6PVL3 124 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 H3BRN7 92 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 DFFAO00273 331 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 UPK1AO00322 258 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 TRDMT1O14717 391 aaKnown RBP0.49□□□□□ -2.33
SCN1A-208ENST00000625916 SLC37A4O43826 429 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 HSBP1O75506 76 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 POP7O75817 140 aaKnown RBP0.49□□□□□ -2.33
SCN1A-208ENST00000625916 DHRS3O75911 302 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 GZMBP10144 247 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 GTF2F2P13984 249 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 HTR2CP28335 458 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 MAGEA3P43357 314 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 CLDN6P56747 220 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 ST3GAL4Q11206 333 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 DNAJC3Q13217 504 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 CDNFQ49AH0 187 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 ATP6AP1LQ52LC2 224 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 SPIN4Q56A73 249 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 MLIPQ5VWP3 458 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 ANGPTL8Q6UXH0 198 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 VTCN1Q7Z7D3 282 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 LINC00596Q86U02 117 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 MUC15Q8N387 334 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 LINC00337Q8N6G1 96 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 CCNYL1Q8N7R7 359 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 INO80EQ8NBZ0 244 aaPredicted RBP0.49□□□□□ -2.33
SCN1A-208ENST00000625916 MFSD8Q8NHS3 518 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 UBA3Q8TBC4 463 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 TMEM234Q8WY98 164 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 TNFRSF14Q92956 283 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 ZNF625Q96I27 306 aaPredicted RBP0.49□□□□□ -2.33
SCN1A-208ENST00000625916 DNAJC30Q96LL9 226 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 METTL26Q96S19 204 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 B9D2Q9BPU9 175 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 TMED9Q9BVK6 235 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 NAA50Q9GZZ1 169 aaKnown RBP0.49□□□□□ -2.33
SCN1A-208ENST00000625916 MFSD1Q9H3U5 465 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 CLSTN2Q9H4D0 955 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 OR5V1Q9UGF6 321 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 ZNF706Q9Y5V0 76 aaPredicted RBP0.49□□□□□ -2.33
SCN1A-208ENST00000625916 KMT2EQ8IZD2 1858 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 COL4A1P02462 1669 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 NOTCH1P46531 2555 aa0.49□□□□□ -2.33
SCN1A-208ENST00000625916 PLXNA3P51805 1871 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 ICE1Q9Y2F5 2266 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 MYO9BQ13459 2157 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 TRBV24-1A0A075B6N3 115 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 LOC389332A0A1B0GUA5 103 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 A0A1W2PQL4 384 aaPredicted RBP0.48□□□□□ -2.33
SCN1A-208ENST00000625916 C17orf98A8MV24 154 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 H3BN98 237 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 ERLIN1O75477 346 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 PDYNP01213 254 aa0.48□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms