RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 HDGFL3Q9Y3E1 203 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 IGHV1OR21-1A0A087WYE8 117 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 EFNA2O43921 213 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 PDGFBP01127 241 aaPredicted RBP7.63□□□□□ -1.19
VCL-207ENST00000624354 GAPDHP04406 335 aaKnown RBP7.63□□□□□ -1.19
VCL-207ENST00000624354 FABP4P15090 132 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 SERPINA2P20848 420 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 CD27P26842 260 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 MSX1P28360 303 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 FCGR2CP31995 323 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 PTGER4P35408 488 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 ECI1P42126 302 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 GRB2P62993 217 aaKnown RBP7.63□□□□□ -1.19
VCL-207ENST00000624354 ZNF385CQ66K41 422 aaPredicted RBP7.63□□□□□ -1.19
VCL-207ENST00000624354 RTL6Q6ICC9 239 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 SLC25A47Q6Q0C1 308 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 OPN5Q6U736 354 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 SULF2Q8IWU5 870 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 HIST3H2BBQ8N257 126 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 OR14K1Q8NGZ2 314 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 STT3BQ8TCJ2 826 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 PGAM5Q96HS1 289 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 PECRQ9BY49 303 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 PARP12Q9H0J9 701 aaKnown RBP7.63□□□□□ -1.19
VCL-207ENST00000624354 ELL3Q9HB65 397 aaPredicted RBP7.63□□□□□ -1.19
VCL-207ENST00000624354 FBXL17Q9UF56 701 aa7.63□□□□□ -1.19
VCL-207ENST00000624354 PHOX2AO14813 284 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 DUX1O43812 170 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 HPNP05981 417 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 SNRPCP09234 159 aaKnown RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 QDPRP09417 244 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 ZNF43P17038 809 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 SNCAP37840 140 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 MIDNQ504T8 468 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 GFI1BQ5VTD9 330 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 COMMD1Q8N668 190 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 SMRP1Q8NCR6 262 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 ADPRHL1Q8NDY3 354 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 OR9K2Q8NGE7 335 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 SSC4DQ8WTU2 575 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 PRRX2Q99811 253 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 FGF21Q9NSA1 209 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 TMED3Q9Y3Q3 217 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 THADAQ6YHU6 1953 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 CACNA1DQ01668 2161 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 IGHV1OR15-9A0A0B4J2B8 117 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 A0A1W2PR77 199 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 ETV2O00321 342 aaPredicted RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 TRAF3IP2O43734 574 aaPredicted RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 SOD3P08294 240 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 CEACAM6P40199 344 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 GUCA1AP43080 201 aaPredicted RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 TMEM33P57088 247 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 ACY1Q03154 408 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 TNFRSF9Q07011 255 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 AKR1C8PQ5T2L2 129 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 C1QL2Q7Z5L3 287 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 TSTD1Q8NFU3 115 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 SEMA6DQ8NFY4 1073 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 OR10AD1Q8NGE0 317 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 ZNF2Q9BSG1 426 aaPredicted RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 SMIM3Q9BZL3 60 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 CRLF2Q9HC73 371 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 PNRC2Q9NPJ4 139 aaKnown RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 FAM212BQ9NTI7 297 aaPredicted RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 LSM5Q9Y4Y9 91 aaKnown RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 TPRP12270 2363 aaKnown RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 DMXL1Q9Y485 3027 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 A0A1W2PNR3 127 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 CYTIPO60759 359 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 DEDDO75618 318 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 PTBP3O95758 552 aaKnown RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 ANOS1P23352 680 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 ALDH3B1P43353 468 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 FAM3AP98173 230 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 ZNF616Q08AN1 781 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 EIF3IQ13347 325 aaKnown RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 PPA1Q15181 289 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 LPAL2Q16609 132 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 PLPPR5Q32ZL2 321 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 LCN10Q6JVE6 187 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 ZNF775Q96BV0 537 aaPredicted RBP7.62□□□□□ -1.19
VCL-207ENST00000624354 ATG101Q9BSB4 218 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 NDUFAF3Q9BU61 184 aa7.62□□□□□ -1.19
VCL-207ENST00000624354 PUS1Q9Y606 427 aaKnown RBP eCLIP7.62□□□□□ -1.19
VCL-207ENST00000624354 TRBV11-1A0A0K0K1C0 115 aa7.61□□□□□ -1.19
VCL-207ENST00000624354 SMCO3A2RU48 225 aa7.61□□□□□ -1.19
VCL-207ENST00000624354 MARCH11A6NNE9 402 aa7.61□□□□□ -1.19
VCL-207ENST00000624354 FOXI3A8MTJ6 420 aaPredicted RBP7.61□□□□□ -1.19
VCL-207ENST00000624354 RPL36A-HNRNPH2H7BZ11 118 aa7.61□□□□□ -1.19
VCL-207ENST00000624354 TLX3O43711 291 aaPredicted RBP7.61□□□□□ -1.19
VCL-207ENST00000624354 NME2P1O60361 137 aa7.61□□□□□ -1.19
VCL-207ENST00000624354 HIST1H2BKO60814 126 aa7.61□□□□□ -1.19
VCL-207ENST00000624354 SCGB1D2O95969 90 aa7.61□□□□□ -1.19
VCL-207ENST00000624354 HIST1H2BJP06899 126 aa7.61□□□□□ -1.19
VCL-207ENST00000624354 HEXBP07686 556 aa7.61□□□□□ -1.19
VCL-207ENST00000624354 PAX1P15863 534 aa7.61□□□□□ -1.19
VCL-207ENST00000624354 HIST1H2BOP23527 126 aa7.61□□□□□ -1.19
VCL-207ENST00000624354 HIST1H2BBP33778 126 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms