RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GABARAPO95166 117 aa16.47■□□□□ 0.23
UPF3A-211ENST00000618700 CFPP27918 469 aa16.47■□□□□ 0.23
UPF3A-211ENST00000618700 LMO4P61968 165 aa16.47■□□□□ 0.23
UPF3A-211ENST00000618700 KCNJ8Q15842 424 aa16.47■□□□□ 0.23
UPF3A-211ENST00000618700 FAM166AQ6J272 317 aa16.47■□□□□ 0.23
UPF3A-211ENST00000618700 NR2C2APQ86WQ0 139 aa16.47■□□□□ 0.23
UPF3A-211ENST00000618700 Q8NFD4 153 aa16.47■□□□□ 0.23
UPF3A-211ENST00000618700 C1orf147Q96MC9 270 aaPredicted RBP16.47■□□□□ 0.23
UPF3A-211ENST00000618700 NAA50Q9GZZ1 169 aaKnown RBP16.47■□□□□ 0.23
UPF3A-211ENST00000618700 NARFLQ9H6Q4 476 aa16.47■□□□□ 0.23
UPF3A-211ENST00000618700 DNAJB11Q9UBS4 358 aa16.47■□□□□ 0.23
UPF3A-211ENST00000618700 MRPS28Q9Y2Q9 187 aaKnown RBP16.47■□□□□ 0.23
UPF3A-211ENST00000618700 F5H0A9 414 aaPredicted RBP16.46■□□□□ 0.23
UPF3A-211ENST00000618700 SLC22A1O15245 554 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 CDRT1O95170 752 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 KNG1P01042 644 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 IGHV2-5P01817 119 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 GYPAP02724 150 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 RAB3BP20337 219 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 PSMD7P51665 324 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 OR10A3P58181 314 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 GPR107Q5VW38 600 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 ELP2Q6IA86 826 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 DCDC5Q6ZRR9 648 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 TPRA1Q86W33 373 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 FAM58AQ8N1B3 248 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 CIARTQ8N365 385 aaPredicted RBP16.46■□□□□ 0.23
UPF3A-211ENST00000618700 OR6M1Q8NGM8 313 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 ANGPTL6Q8NI99 470 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 TBC1D15Q8TC07 691 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 EMG1Q92979 244 aaKnown RBP16.46■□□□□ 0.23
UPF3A-211ENST00000618700 ZNF665Q9H7R5 613 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 HMG20AQ9NP66 347 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 ZNF222Q9UK12 451 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 V9GY05 133 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 CR1P17927 2039 aa16.46■□□□□ 0.23
UPF3A-211ENST00000618700 IGKV1D-17A0A075B6S4 117 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 A0A0G2JK05 382 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 OR2AT4A6NND4 320 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 H7C1Q1 480 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 SLC17A2O00624 439 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 NDUFA2O43678 99 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 PSG2P11465 335 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 AMY2BP19961 511 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 IL2RGP31785 369 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 SDC2P34741 201 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 TGFBR1P36897 503 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 LSM3P62310 102 aaKnown RBP16.45■□□□□ 0.22
UPF3A-211ENST00000618700 ATPAF1Q5TC12 328 aaPredicted RBP16.45■□□□□ 0.22
UPF3A-211ENST00000618700 GLIPR1L1Q6UWM5 242 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 COX4I2Q96KJ9 171 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 DNTTIP1Q9H147 329 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 METTL9Q9H1A3 318 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 PATZ1Q9HBE1 687 aaKnown RBP16.45■□□□□ 0.22
UPF3A-211ENST00000618700 IL36RNQ9UBH0 155 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 KAAG1Q9UBP8 84 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 ZANQ9Y493 2812 aa16.45■□□□□ 0.22
UPF3A-211ENST00000618700 ABCA2Q9BZC7 2435 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 AVPP01185 164 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 PRKACAP17612 351 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 CPT2P23786 658 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 HTR2CP28335 458 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 BMXP51813 675 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 FGF12P61328 243 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 NCS1P62166 190 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 ZNF146Q15072 292 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 RSU1Q15404 277 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 CTF1Q16619 201 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 DGUOKQ16854 277 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 AWAT2Q6E213 333 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 LYPD2Q6UXB3 125 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 OR5T2Q8NGG2 359 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 OR10K1Q8NGX5 313 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 SLC25A28Q96A46 364 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 ELL3Q9HB65 397 aaPredicted RBP16.44■□□□□ 0.22
UPF3A-211ENST00000618700 CTSZQ9UBR2 303 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 GHRLQ9UBU3 117 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 ING4Q9UNL4 249 aa16.44■□□□□ 0.22
UPF3A-211ENST00000618700 RFPL4AA6NLU0 287 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 IFITM5A6NNB3 132 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 RFPL4AL1F8VTS6 287 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 AIPO00170 330 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 ZNF780AO75290 641 aaPredicted RBP16.43■□□□□ 0.22
UPF3A-211ENST00000618700 WNT2P09544 360 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 CLEC2LP0C7M8 214 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 UBBP0CG47 229 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 NHLRC3Q5JS37 347 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 ZNF788Q6ZQV5 615 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 MAPK1IP1LQ8NDC0 245 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 OR51T1Q8NGJ9 327 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 RAB39BQ96DA2 213 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 C1orf159Q96HA4 380 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 S100A13Q99584 98 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 SEBOXQ9HB31 216 aaPredicted RBP16.43■□□□□ 0.22
UPF3A-211ENST00000618700 PLGRKTQ9HBL7 147 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 MIOXQ9UGB7 285 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 HIVEP1P15822 2718 aa16.43■□□□□ 0.22
UPF3A-211ENST00000618700 A0A1B0GW55 424 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 A0A1W2PP11 408 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 SMIM30A4D0T7 59 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms