RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 DEPPQ9NTK1 212 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 ZNF701Q9NV72 531 aaPredicted RBP12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 ZNF878C9JN71 531 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 HEXAP06865 529 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 FCGR2AP12318 317 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 ACKR3P25106 362 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 MSX1P28360 303 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 CLDN15P56746 228 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 ROM1Q03395 351 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 CDCP2Q5VXM1 449 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 SLC25A42Q86VD7 318 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 DTX1Q86Y01 620 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 PAQR4Q8N4S7 273 aaPredicted RBP12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 BOKQ9UMX3 212 aaPredicted RBP12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 TEX13DA0A0J9YY54 714 aaPredicted RBP12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 CXorf65A6NEN9 183 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 GPR37O15354 613 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 SPRY1O43609 319 aaPredicted RBP12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 CD1AP06126 327 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 CD63P08962 238 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 RAB5AP20339 215 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 NTF4P34130 210 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 RPS10P46783 165 aaKnown RBP12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 SSX9Q7RTT3 188 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 MITD1Q8WV92 249 aa12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 MRPS28Q9Y2Q9 187 aaKnown RBP12.67□□□□□ -0.38
SHROOM1-208ENST00000617339 DMXL2Q8TDJ6 3036 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 TMEM225BP0DP42 221 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 LIFP15018 202 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 CSRP1P21291 193 aaKnown RBP12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 CSNK2A1P68400 391 aaPredicted RBP12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 CYB5R2Q6BCY4 276 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 ASB13Q8WXK3 278 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 TOLLIPQ9H0E2 274 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 TAF9BQ9HBM6 251 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 FAM206AQ9NX38 181 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 PIGLQ9Y2B2 252 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 ZNF318Q5VUA4 2279 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 ESPL1Q14674 2120 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 MRPL33O75394 65 aaKnown RBP12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 MT-ND4LP03901 98 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 VSIG8P0DPA2 414 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 PPP1R32Q7Z5V6 425 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 ADGRE4PQ86SQ3 457 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 GCNT2Q8N0V5 402 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 ZNF565Q8N9K5 539 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 SLAMF9Q96A28 289 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 PRRT1Q99946 306 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 TMEM100Q9NV29 134 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 METTL1Q9UBP6 276 aaKnown RBP12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 MMP24Q9Y5R2 645 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 AP4M1O00189 453 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 TRA2AQ13595 282 aaKnown RBP eCLIP12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 OR9K2Q8NGE7 335 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 OR51T1Q8NGJ9 327 aa12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 MRPL13Q9BYD1 178 aaKnown RBP12.66□□□□□ -0.38
SHROOM1-208ENST00000617339 A0A1W2PR80 420 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 OR13C7P0DN81 318 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 GLP1RP43220 463 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 GSK3AP49840 483 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 RAB32Q13637 225 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 KIAA0141Q14154 515 aaPredicted RBP12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 OR1C1Q15619 314 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 IGFBP7Q16270 282 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 ACTBL2Q562R1 376 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 FIP1L1Q6UN15 594 aaKnown RBP12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 DMRTC2Q8IXT2 367 aaPredicted RBP12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 SIGLEC12Q96PQ1 595 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 PROK2Q9HC23 129 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 SPG11Q96JI7 2443 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 HSPB6O14558 160 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 NKX2-8O15522 239 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 ZFP36L1Q07352 338 aaKnown RBP12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 OR10D3Q8NH80 312 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 MRGPRFQ96AM1 343 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 CACFD1Q9UGQ2 172 aa12.65□□□□□ -0.38
SHROOM1-208ENST00000617339 TLN1Q9Y490 2541 aaKnown RBP12.65□□□□□ -0.39
SHROOM1-208ENST00000617339 NUP210LQ5VU65 1888 aa12.65□□□□□ -0.39
SHROOM1-208ENST00000617339 DHHO43323 396 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 IFNA2P01563 188 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 FOXC1Q12948 553 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 UNC119Q13432 240 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 SNAI3Q3KNW1 292 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 DYRK2Q92630 601 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 AQP7P3A6NL99 342 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 F8VVB4 439 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 F8VWA3 439 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 EFSO43281 561 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 SCGB1D2O95969 90 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 S100A2P29034 98 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 PMP22Q01453 160 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 SRSF6Q13247 344 aaKnown RBP12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 CEACAM16Q2WEN9 425 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 Q3ZCU0 254 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 ZNF581Q9P0T4 197 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 PUS1Q9Y606 427 aaKnown RBP eCLIP12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 URGCP-MRPS24S4R325 110 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 ZNF729A6NN14 1252 aaPredicted RBP12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 CBR3O75828 277 aa12.64□□□□□ -0.39
SHROOM1-208ENST00000617339 TSPAN15O95858 294 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms