RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 FOXJ3Q9UPW0 622 aa13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 SF3B6Q9Y3B4 125 aaKnown RBP13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 SETD2Q9BYW2 2564 aaPredicted RBP13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 SVEP1Q4LDE5 3571 aa13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 A0A0G2JMP0 313 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 A0A0X1KG70 313 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 DPPA5A6NC42 116 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 NKX6-3A6NJ46 265 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 TRIM64CA6NLI5 447 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 RFPL4AA6NLU0 287 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 RFPL4AL1F8VTS6 287 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 DVL1O14640 695 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 ANGPTL7O43827 346 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 BCL3P20749 454 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 NPBWR2P48146 333 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 RPS25P62851 125 aaKnown RBP13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 PAX2Q02962 417 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 CR1LQ2VPA4 569 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 ARMCX4Q5H9R4 360 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 DDI2Q5TDH0 399 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 FAHD2BQ6P2I3 314 aaPredicted RBP13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 SATL1Q86VE3 508 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 Q8IYB0 196 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 SAXO1Q8IYX7 474 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 OR4M2Q8NGB6 313 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 DACT3Q96B18 629 aaPredicted RBP13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 FAHD2AQ96GK7 314 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 RBFOX1Q9NWB1 397 aaKnown RBP13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 OR5V1Q9UGF6 321 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 A6NHS1 94 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 GABRPO00591 440 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 SIGLEC5O15389 551 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 KDM4BO94953 1096 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 KNG1P01042 644 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 TMEM225BP0DP42 221 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 SELLP14151 372 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 GATA3P23771 443 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 GABRA2P47869 451 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 IL13RA1P78552 427 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 IKZF1Q13422 519 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 TRAM1Q15629 374 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 SSX1Q16384 188 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 FAM120AOSQ5T036 256 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 FAM27D1Q5T7N8 215 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 DCAF12L2Q5VW00 463 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 CEACAM19Q7Z692 300 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 FGFRL1Q8N441 504 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 ZSCAN4Q8NAM6 433 aaPredicted RBP13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 SDSLQ96GA7 329 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 MED30Q96HR3 178 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 GPER1Q99527 375 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 NKX3-1Q99801 234 aaPredicted RBP13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 MAB21L2Q9Y586 359 aa13.74□□□□□ -0.21
CCDC28A-202ENST00000611852 NIPBLQ6KC79 2804 aaeCLIP13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 LOC105371242A0A075B767 164 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 C22orf46C9J442 243 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 MAS1P04201 325 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 TFAP2AP05549 437 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 SFTPBP07988 381 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 PSMA1P25786 263 aaKnown RBP13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 GABRA5P31644 462 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 PRDX2P32119 198 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 ZNF93P35789 620 aaPredicted RBP13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 CEBPDP49716 269 aaPredicted RBP13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 GP2P55259 537 aaKnown RBP13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 DGUOKQ16854 277 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 TMEM91Q6ZNR0 172 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 FAM58AQ8N1B3 248 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 CD177Q8N6Q3 437 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 ZNRF1Q8ND25 227 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 FCGR1BQ92637 280 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 EMG1Q92979 244 aaKnown RBP13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 FAM192AQ9GZU8 254 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 PPIL3Q9H2H8 161 aaKnown RBP13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 OR14J1Q9UGF5 321 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 INSIG2Q9Y5U4 225 aa13.73□□□□□ -0.21
CCDC28A-202ENST00000611852 IGHV2-70DA0A0C4DH43 119 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 J3QLI3 93 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 NDUFB3O43676 98 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 CRLF1O75462 422 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 UCHL1P09936 223 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 OR3A4PP47883 348 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 C11orf91Q3C1V1 193 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 LRRC10Q5BKY1 277 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 CD276Q5ZPR3 534 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 C1QL2Q7Z5L3 287 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 PXT1Q8NFP0 134 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 TNFAIP8L1Q8WVP5 186 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 RAB40AQ8WXH6 277 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 ST8SIA4Q92187 359 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 TMPRSS13Q9BYE2 586 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 SHARPINQ9H0F6 387 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 RHOFQ9HBH0 211 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 NDUFB11Q9NX14 153 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 NDUFA13Q9P0J0 144 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 IL36RNQ9UBH0 155 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 CDC42EP3Q9UKI2 254 aa13.72□□□□□ -0.21
CCDC28A-202ENST00000611852 SMIM31A0A1B0GVY4 71 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 GPR37O15354 613 aa13.71□□□□□ -0.21
CCDC28A-202ENST00000611852 RGS9O75916 674 aaPredicted RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms